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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS28990 and RR42_RS28995 are separated by 9 nucleotides
RR42_RS28995 and RR42_RS29000 are separated by 62 nucleotides
RR42_RS29000 and RR42_RS29005 are separated by 187 nucleotides
RR42_RS29005 and RR42_RS29010 are separated by 19 nucleotides
RR42_RS28990: RR42_RS28990 - hypothetical protein, at 1,861,582 to 1,862,355
_RS28990
RR42_RS28995: RR42_RS28995 - arylamine N-acetyltransferase, at 1,862,365 to 1,863,222
_RS28995
RR42_RS29000: RR42_RS29000 - Crp/Fnr family transcriptional regulator, at 1,863,285 to 1,863,995
_RS29000
RR42_RS29005: RR42_RS29005 - membrane protein, at 1,864,183 to 1,864,680
_RS29005
RR42_RS29010: RR42_RS29010 - LysR family transcriptional regulator, at 1,864,700 to 1,865,611
_RS29010
Group
Condition
RR42
_RS28990
RR42
_RS28995
RR42
_RS29000
RR42
_RS29005
RR42
_RS29010
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.4
-0.3
-0.1
-0.8
-0.1
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+0.3
-0.3
-0.2
-1.2
-0.1
nitrogen source
Glucuronamide (N)
-0.5
-0.2
-0.2
-0.6
+0.1
nitrogen source
D-Alanine (N)
-0.4
+0.0
+0.0
-0.8
-0.0
stress
R2A with Cisplatin 0.001 mg/ml
-0.4
-0.2
+0.0
-0.7
+0.1
stress
R2A with Lomefloxacin 0.00075 mM
-0.5
+0.3
-0.2
-0.6
-0.1
lb
LB
+0.5
-0.1
-0.3
-1.0
-0.0
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.2
+0.2
-0.6
-0.2
-0.0
nitrogen source
L-Asparagine (N)
-0.4
-0.2
+0.2
-0.1
-0.3
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.2
+0.2
-0.3
-0.8
+0.0
carbon source
succinate (C)
-0.1
+0.1
+0.3
-0.6
-0.3
stress
R2A with D-Cycloserine 0.5 mg/ml
-0.7
-0.0
+0.3
+0.2
-0.2
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
+0.3
-0.0
+0.0
-0.8
+0.1
carbon source
Protocatechuic Acid (C)
+0.3
+0.2
-0.3
-0.2
-0.3
carbon source
pyruvate (C)
-0.2
-0.1
+0.5
-0.2
-0.3
carbon source
Pimelic (C)
+0.2
+0.1
+0.1
-0.7
-0.1
carbon source
L-Asparagine (C)
-0.2
-0.4
+0.3
+0.4
-0.2
nitrogen source
L-Phenylalanine (N)
-0.2
+0.3
-0.2
-0.3
+0.2
stress
R2A with Paraquat dichloride 0.064 mg/ml
+0.5
+0.2
-0.1
-0.6
-0.1
carbon source
L-Alanine (C)
+0.3
-0.0
+0.5
-0.7
-0.1
nitrogen source
L-Lysine (N)
-0.1
-0.2
+0.6
-0.1
-0.2
carbon source
4-Hydroxybenzoic Acid (C)
-0.5
-0.0
+0.4
+0.2
-0.1
carbon source
Ethanol (C)
+0.1
-0.1
+0.5
-0.4
-0.1
stress
R2A with Nickel (II) chloride 0.25 mM
+0.6
+0.1
-0.2
-0.2
-0.2
nitrogen source
L-Leucine (N)
+0.4
+0.3
-0.3
-0.2
+0.1
nitrogen source
D-Alanine (N)
-0.4
+0.1
+0.6
+0.1
-0.2
carbon source
a-Ketoglutaric (C)
+0.3
+0.1
+0.2
-0.4
+0.1
carbon source
L-Lactate (C)
-0.0
+0.2
+0.4
+0.3
-0.2
carbon source
succinate (C)
+0.3
+0.3
-0.1
+0.4
-0.1
carbon source
Disodium Glutarate (C)
-0.2
+0.3
+0.3
+0.2
+0.1
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