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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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5
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS28965 and RR42_RS28970 are separated by 61 nucleotides
RR42_RS28970 and RR42_RS28975 are separated by 15 nucleotides
RR42_RS28975 and RR42_RS28980 are separated by 180 nucleotides
RR42_RS28980 and RR42_RS28985 are separated by 197 nucleotides
RR42_RS28965: RR42_RS28965 - hypothetical protein, at 1,856,240 to 1,856,707
_RS28965
RR42_RS28970: RR42_RS28970 - 3-oxoacyl-ACP reductase, at 1,856,769 to 1,857,527
_RS28970
RR42_RS28975: RR42_RS28975 - acid phosphatase, at 1,857,543 to 1,858,343
_RS28975
RR42_RS28980: RR42_RS28980 - fatty acid--CoA ligase, at 1,858,524 to 1,860,266
_RS28980
RR42_RS28985: RR42_RS28985 - short-chain dehydrogenase, at 1,860,464 to 1,861,228
_RS28985
Group
Condition
RR42
_RS28965
RR42
_RS28970
RR42
_RS28975
RR42
_RS28980
RR42
_RS28985
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.4
-0.5
-0.4
+0.0
+0.0
stress
R2A with nitrate 200 mM
-0.3
-0.2
-0.1
-0.3
+0.1
stress
R2A with copper (II) chloride 0.25 mM
-0.4
-0.2
-0.3
+0.1
+0.1
carbon source
Carbon source Phenylacetic 2.5 mM
-0.4
-0.4
-0.1
+0.2
+0.1
stress
R2A with Thallium(I) acetate 0.001 mg/ml
-0.5
-0.4
+0.2
-0.2
+0.1
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.4
+0.2
-0.5
+0.1
-0.1
stress
R2A with Vancomycin 0.5 mg/ml
+0.3
-0.1
-0.6
-0.1
+0.0
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.2
-0.3
-0.2
-0.1
+0.1
carbon source
succinate (C)
-0.1
-0.5
+0.3
-0.1
+0.1
carbon source
Suberic (C)
-0.2
+0.1
+0.3
-0.1
-0.3
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.2
-0.4
+0.0
+0.1
+0.2
stress
R2A with Cobalt chloride 0.5 mM
+0.1
-0.5
+0.1
-0.1
+0.2
stress
R2A with Sisomicin 0.035 mg/ml
+0.4
-0.5
-0.2
-0.0
+0.1
carbon source
L-Lactate (C)
-0.1
-0.3
+0.3
-0.0
+0.1
carbon source
D-Fructose (C)
-0.2
+0.3
-0.3
+0.0
+0.2
carbon source
L-Threonine (C)
+0.2
-0.1
-0.3
-0.1
+0.3
nitrogen source
L-Isoleucine (N)
-0.3
+0.4
-0.2
+0.1
+0.2
carbon source
Heptanoic (C)
-0.3
+0.6
-0.1
-0.1
+0.1
oxygen_nitrate
exometabolites; 5% oxygen; 5 mM nitrate
-0.0
+0.3
-0.3
+0.1
+0.3
carbon source
Heptanoic (C)
-0.3
+0.2
+0.1
-0.0
+0.3
stress
R2A with Chlorite 4 mM
+0.3
-0.3
+0.2
+0.1
+0.1
carbon source
succinate (C)
+0.1
+0.5
-0.2
+0.0
+0.0
nitrogen source
L-Lysine (N)
+0.2
+0.5
-0.2
+0.1
+0.0
stress
R2A with Lomefloxacin 0.001 mM
+0.3
-0.7
-0.5
+0.7
+0.9
lb
LB
+0.6
+0.1
+0.0
-0.3
+0.3
carbon source
Valeric (C)
+0.3
+0.4
-0.3
+0.1
+0.2
stress
R2A with Lomefloxacin 0.00075 mM
-0.3
+0.4
+0.1
+0.3
+0.3
carbon source
4-Hydroxybenzoic Acid (C)
+0.1
+0.7
-0.2
+0.2
+0.1
carbon source
D-Gluconic Acid (C)
+0.0
+0.5
+0.1
+0.1
+0.1
carbon source
adipate (C)
+0.3
+0.4
+0.3
-0.0
+0.1
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