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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS28915 and RR42_RS28920 are separated by 173 nucleotides
RR42_RS28920 and RR42_RS28925 are separated by 861 nucleotides
RR42_RS28925 and RR42_RS28930 overlap by 28 nucleotides
RR42_RS28930 and RR42_RS28935 are separated by 61 nucleotides
RR42_RS28915: RR42_RS28915 - membrane protein, at 1,844,119 to 1,844,670
_RS28915
RR42_RS28920: RR42_RS28920 - hypothetical protein, at 1,844,844 to 1,845,044
_RS28920
RR42_RS28925: RR42_RS28925 - glucan biosynthesis protein G, at 1,845,906 to 1,847,489
_RS28925
RR42_RS28930: RR42_RS28930 - glucosyltransferase MdoH, at 1,847,462 to 1,850,014
_RS28930
RR42_RS28935: RR42_RS28935 - hypothetical protein, at 1,850,076 to 1,850,657
_RS28935
Group
Condition
RR42
_RS28915
RR42
_RS28920
RR42
_RS28925
RR42
_RS28930
RR42
_RS28935
stress
R2A with Lomefloxacin 0.001 mM
-0.3
-0.6
+0.1
-0.2
-2.0
stress
R2A with nitrate 200 mM
-0.9
-1.3
-0.2
-0.1
-0.5
stress
R2A with Paraquat dichloride 0.064 mg/ml
+0.0
-0.8
-0.1
-0.2
-1.2
nitrogen source
L-Leucine (N)
-0.1
-2.3
+0.1
+0.0
+0.1
stress
R2A with Chloride 300 mM
-1.4
-0.3
+0.1
-0.1
-0.4
stress
R2A with Lomefloxacin 0.00075 mM
+0.1
-0.5
+0.2
-0.1
-1.6
stress
R2A with Chloride 300 mM
-1.6
+0.1
+0.1
+0.0
-0.4
carbon source
Pimelic (C)
+0.1
-0.1
+0.0
+0.2
-2.0
stress
R2A with Doxycycline hyclate 0.0001 mg/ml
+0.1
+0.8
-0.0
-0.2
-2.3
carbon source
adipate (C)
-0.1
-0.3
+0.4
+0.2
-1.8
carbon source
Protocatechuic Acid (C)
-0.2
-1.3
+0.1
+0.1
-0.2
stress
R2A with Cobalt chloride 0.5 mM
-0.3
+0.3
+0.1
+0.1
-1.6
carbon source
adipate (C)
-0.0
+0.8
-0.0
+0.1
-1.9
stress
R2A with Sisomicin 0.035 mg/ml
-0.1
+0.6
-0.0
-0.1
-1.2
stress
R2A with D-Cycloserine 0.5 mg/ml
-0.0
-1.0
-0.1
-0.3
+0.7
carbon source
Pimelic (C)
+0.3
+0.6
+0.2
+0.2
-1.4
lb
LB
+0.5
-0.8
+0.3
+0.1
-0.0
carbon source
succinate (C)
+0.4
+0.7
+0.2
+0.1
-1.3
nitrogen source
Glycine (N)
+0.2
-0.7
+0.4
+0.3
+0.2
carbon source
Octanoic (C)
+0.1
-0.8
+0.4
+0.5
+0.2
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.2
+0.8
-0.3
-0.1
+0.5
carbon source
succinate (C)
+0.4
+1.0
+0.1
+0.1
-0.8
stress
R2A with nitrate 200 mM
-0.7
+0.5
+0.2
+0.1
+0.8
stress
R2A with Nickel (II) chloride 0.35 mM
-0.0
-0.6
+0.0
+0.2
+1.8
stress
R2A with Vancomycin 0.5 mg/ml
-0.0
-1.1
-0.0
-0.1
+2.7
stress
R2A with Nickel (II) chloride 0.35 mM
-0.1
+0.6
-0.3
-0.3
+2.2
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.2
+0.8
+0.1
+0.1
+1.1
stress
R2A with Nickel (II) chloride 0.5 mM
-0.0
-0.7
+0.2
+0.1
+3.2
stress
R2A with Polymyxin B sulfate 0.005 mg/ml
+0.2
+0.1
-0.0
-0.1
+3.4
stress
R2A with Vancomycin 0.5 mg/ml
+0.0
+0.8
+0.1
+0.3
+2.8
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RR42_RS28925
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