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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS28835 and RR42_RS28840 are separated by 116 nucleotides
RR42_RS28840 and RR42_RS28845 are separated by 40 nucleotides
RR42_RS28845 and RR42_RS28850 are separated by 2 nucleotides
RR42_RS28850 and RR42_RS28855 are separated by 147 nucleotides
RR42_RS28835: RR42_RS28835 - gluconate:H+ symporter (gntT)
(from data)
, at 1,822,732 to 1,824,093
_RS28835
RR42_RS28840: RR42_RS28840 - hypothetical protein, at 1,824,210 to 1,824,602
_RS28840
RR42_RS28845: RR42_RS28845 - D-aminoacylase, at 1,824,643 to 1,826,136
_RS28845
RR42_RS28850: RR42_RS28850 - transcriptional regulator, at 1,826,139 to 1,827,032
_RS28850
RR42_RS28855: RR42_RS28855 - amino acid deaminase, at 1,827,180 to 1,828,448
_RS28855
Group
Condition
RR42
_RS28835
RR42
_RS28840
RR42
_RS28845
RR42
_RS28850
RR42
_RS28855
carbon source
D-Gluconic Acid (C)
-2.5
-1.5
-1.3
-0.8
-0.2
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.1
-0.1
+0.2
-2.0
-0.3
stress
R2A with Cisplatin 0.001 mg/ml
-0.2
-0.2
+0.1
-1.6
-0.4
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.2
-0.8
+0.1
-0.2
-0.7
stress
R2A with Vancomycin 0.5 mg/ml
+0.0
-0.4
-0.2
-0.6
-0.6
carbon source
Hexanoic (C)
+0.2
-0.3
+0.0
-0.8
-0.7
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
-0.4
-0.4
+0.1
-0.4
-0.3
stress
R2A with Vancomycin 0.5 mg/ml
-0.0
-0.2
+0.1
-0.8
-0.4
temperature
R2A 23C
+0.2
-0.0
-0.1
-1.2
-0.1
stress
R2A with Polymyxin B sulfate 0.005 mg/ml
-0.1
+0.1
-0.2
-0.8
-0.4
stress
R2A with A22 0.01 mg/ml
-0.0
-0.3
+0.2
-0.6
-0.4
stress
R2A with Sisomicin 0.035 mg/ml
-0.1
-0.1
-0.1
-1.0
+0.2
stress
R2A with Thallium(I) acetate 0.001 mg/ml
-0.2
+0.1
+0.1
-1.3
+0.2
nitrogen source
Glucuronamide (N)
+0.5
-0.2
+0.0
-0.9
-0.4
oxygen_nitrate
exometabolites; 5% oxygen; 5 mM nitrate
+0.1
+0.0
-0.2
-1.1
+0.2
stress
R2A with Nickel (II) chloride 0.5 mM
-0.1
+0.1
+0.3
-1.0
-0.2
nitrogen source
L-Valine (N)
-0.5
+0.2
-0.2
-0.6
+0.1
lb
LB
+0.3
-0.7
-0.0
-0.5
+0.2
stress
R2A with D-Cycloserine 0.5 mg/ml
-0.1
+0.1
+0.4
-0.7
-0.4
nitrogen source
nitrite (N)
+0.2
-0.0
+0.2
-0.8
-0.3
stress
R2A with Nickel (II) chloride 0.35 mM
-0.2
+0.1
-0.1
-0.7
+0.3
carbon source
D-Lactate (C)
+0.2
+0.5
-0.3
-0.8
-0.1
nitrogen source
D-Alanine (N)
-0.0
+0.4
-0.1
-0.8
+0.1
stress
R2A with Lomefloxacin 0.001 mM
-0.9
-0.1
+0.5
+0.7
-0.5
carbon source
L-Histidine (C)
+0.2
+0.1
+0.0
-0.9
+0.4
nitrogen source
L-Leucine (N)
-0.2
+0.5
-0.3
-0.3
+0.3
nitrogen source
L-Isoleucine (N)
-0.1
+0.4
+0.1
-0.5
+0.3
nitrogen source
L-Serine (N)
+0.4
+0.2
+0.4
-0.7
-0.0
nitrogen source
L-Serine (N)
+0.2
+0.3
-0.2
-0.4
+0.3
carbon source
D,L-Lactate (C)
+0.3
+0.5
-0.1
-0.3
+0.5
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