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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS28810 and RR42_RS28815 are separated by 62 nucleotides
RR42_RS28815 and RR42_RS28820 are separated by 195 nucleotides
RR42_RS28820 and RR42_RS28825 are separated by 57 nucleotides
RR42_RS28825 and RR42_RS28830 are separated by 7 nucleotides
RR42_RS28810: RR42_RS28810 - RNA polymerase sigma factor, at 1,815,773 to 1,816,282
_RS28810
RR42_RS28815: RR42_RS28815 - iron dicitrate transport regulator FecR, at 1,816,345 to 1,817,334
_RS28815
RR42_RS28820: RR42_RS28820 - energy transducer TonB, at 1,817,530 to 1,819,662
_RS28820
RR42_RS28825: RR42_RS28825 - energy transducer TonB, at 1,819,720 to 1,822,122
_RS28825
RR42_RS28830: RR42_RS28830 - hypothetical protein, at 1,822,130 to 1,822,462
_RS28830
Group
Condition
RR42
_RS28810
RR42
_RS28815
RR42
_RS28820
RR42
_RS28825
RR42
_RS28830
carbon source
Suberic (C)
N.D.
-0.6
-0.1
+0.0
-0.6
carbon source
Hexanoic (C)
N.D.
-0.3
-0.0
-0.1
-0.8
carbon source
adipate (C)
N.D.
-0.2
+0.1
-0.2
-0.8
carbon source
Protocatechuic Acid (C)
N.D.
-0.4
-0.1
-0.4
-0.2
carbon source
Dodecandioic (C)
N.D.
-0.3
-0.2
-0.2
-0.3
carbon source
succinate (C)
N.D.
-0.2
-0.0
-0.1
-0.5
carbon source
propionate (C)
N.D.
-0.1
-0.1
-0.1
-0.5
carbon source
Pimelic (C)
N.D.
-0.2
-0.1
-0.1
-0.5
stress
R2A with Nickel (II) chloride 0.35 mM
N.D.
-0.7
-0.2
-0.3
+0.5
carbon source
adipate (C)
N.D.
-0.0
+0.1
+0.1
-1.0
stress
R2A with Vancomycin 0.5 mg/ml
N.D.
-0.7
+0.1
-0.3
+0.3
carbon source
Azelaic (C)
N.D.
-0.4
-0.1
-0.2
+0.1
carbon source
Valeric (C)
N.D.
-0.4
-0.2
-0.1
+0.1
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
N.D.
+0.2
-0.1
-0.1
-0.5
carbon source
Suberic (C)
N.D.
-0.4
-0.1
+0.2
-0.1
carbon source
Heptanoic (C)
N.D.
+0.2
-0.1
+0.0
-0.5
stress
R2A with nitrate 200 mM
N.D.
-0.6
+0.1
+0.2
+0.1
stress
R2A with Sisomicin 0.035 mg/ml
N.D.
-0.4
-0.0
-0.1
+0.4
carbon source
D,L-Lactate (C)
N.D.
-0.4
-0.1
+0.2
+0.4
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
N.D.
+0.3
+0.2
-0.2
-0.3
carbon source
L-Asparagine (C)
N.D.
+0.5
+0.0
-0.2
-0.3
carbon source
L-Lactate (C)
N.D.
-0.0
-0.0
-0.2
+0.6
nitrogen source
L-Glutamine (N)
N.D.
+0.1
-0.1
-0.1
+0.5
stress
R2A with Lomefloxacin 0.001 mM
N.D.
+0.5
-0.1
-0.2
+0.2
lb
LB
N.D.
+0.6
+0.2
-0.2
-0.0
stress
R2A with Polymyxin B sulfate 0.005 mg/ml
N.D.
-0.2
+0.1
+0.1
+0.5
carbon source
L-Malic (C)
N.D.
+0.1
+0.0
-0.1
+0.6
carbon source
D,L-Lactate (C)
N.D.
-0.0
+0.0
+0.1
+0.6
stress
R2A with Chlorite 4 mM
N.D.
+0.2
+0.1
+0.1
+0.5
nitrogen source
L-Serine (N)
N.D.
+0.2
+0.1
+0.3
+0.3
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