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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS28480 and RR42_RS28485 are separated by 65 nucleotides
RR42_RS28485 and RR42_RS28490 are separated by 191 nucleotides
RR42_RS28490 and RR42_RS28495 are separated by 55 nucleotides
RR42_RS28495 and RR42_RS28500 are separated by 80 nucleotides
RR42_RS28480: RR42_RS28480 - DSBA oxidoreductase, at 1,748,311 to 1,748,904
_RS28480
RR42_RS28485: RR42_RS28485 - short-chain dehydrogenase, at 1,748,970 to 1,749,698
_RS28485
RR42_RS28490: RR42_RS28490 - hypothetical protein, at 1,749,890 to 1,750,270
_RS28490
RR42_RS28495: RR42_RS28495 - toluene tolerance protein, at 1,750,326 to 1,750,958
_RS28495
RR42_RS28500: RR42_RS28500 - hypothetical protein, at 1,751,039 to 1,751,809
_RS28500
Group
Condition
RR42
_RS28480
RR42
_RS28485
RR42
_RS28490
RR42
_RS28495
RR42
_RS28500
carbon source
Disodium Glutarate (C)
-0.5
-0.7
-0.4
-0.3
-0.3
carbon source
adipate (C)
-0.4
-1.0
-0.2
+0.5
-0.8
carbon source
propionate (C)
-0.5
-0.4
-0.3
-0.1
-0.5
stress
R2A with Polymyxin B sulfate 0.005 mg/ml
-0.6
-0.1
-0.2
-0.4
-0.4
carbon source
Suberic (C)
-1.1
+0.0
+0.2
-0.3
-0.2
nitrogen source
L-Leucine (N)
-1.2
-0.6
+0.2
+0.4
+0.0
carbon source
L-Histidine (C)
-0.4
-0.3
-0.7
+0.3
-0.1
stress
R2A with Chlorite 4 mM
-0.1
-0.8
+0.4
-0.0
-0.5
nitrogen source
L-Phenylalanine (N)
-0.5
-0.7
+0.0
+0.2
+0.1
carbon source
Protocatechuic Acid (C)
-0.7
-0.4
+0.9
-0.2
-0.4
carbon source
Octanoic (C)
+0.5
-0.7
-0.4
-0.2
-0.1
carbon source
propionate (C)
-0.5
-0.6
+0.4
+0.0
-0.2
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
-0.3
+0.3
+0.2
+0.0
-0.9
nitrogen source
Glucuronamide (N)
-0.5
-0.7
+0.1
+0.2
+0.4
stress
R2A with sodium fluoride 100 mM
-0.5
-0.5
-0.2
+0.2
+0.4
carbon source
D,L-Lactate (C)
+0.2
+0.5
-0.7
-0.0
-0.3
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.3
+0.3
+0.5
-0.5
-0.2
carbon source
succinate (C)
-0.6
-0.1
+0.6
+0.1
-0.2
stress
R2A with D-Cycloserine 0.5 mg/ml
-0.0
-0.3
+0.7
+0.2
-0.7
nitrogen source
D-Alanine (N)
+0.2
-0.1
-0.5
+0.5
-0.3
carbon source
L-Asparagine (C)
-0.4
-0.2
+0.5
+0.2
-0.2
carbon source
L-Glutamine (C)
+0.4
-0.8
+0.6
-0.1
-0.2
temperature
R2A 23C
-0.3
+0.2
+0.5
+0.1
-0.5
stress
R2A with nitrate 200 mM
-0.0
-0.6
+0.9
-0.3
+0.1
nitrogen source
casaminos (N)
+0.2
-0.7
+0.2
+0.4
+0.2
stress
R2A with Cobalt chloride 0.5 mM
+0.7
+0.5
-0.1
+0.0
-0.6
nitrogen source
L-Glutamine (N)
+0.0
-0.6
+0.6
+0.2
+0.2
stress
R2A with Zinc 0.1 mM
-0.6
+0.3
+0.7
+0.3
-0.1
lb
LB
+0.7
+1.2
-1.1
+0.3
+0.2
stress
R2A with Cisplatin 0.001 mg/ml
+0.4
+0.6
-0.1
-0.0
+0.6
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