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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS28450 and RR42_RS28455 are separated by 184 nucleotides
RR42_RS28455 and RR42_RS28460 are separated by 74 nucleotides
RR42_RS28460 and RR42_RS28465 are separated by 530 nucleotides
RR42_RS28465 and RR42_RS28470 are separated by 7 nucleotides
RR42_RS28450: RR42_RS28450 - serine dehydratase, at 1,741,864 to 1,743,237
_RS28450
RR42_RS28455: RR42_RS28455 - LysR family transcriptional regulator, at 1,743,422 to 1,744,405
_RS28455
RR42_RS28460: RR42_RS28460 - permease, at 1,744,480 to 1,745,235
_RS28460
RR42_RS28465: RR42_RS28465 - permease, at 1,745,766 to 1,746,857
_RS28465
RR42_RS28470: RR42_RS28470 - hypothetical protein, at 1,746,865 to 1,747,230
_RS28470
Group
Condition
RR42
_RS28450
RR42
_RS28455
RR42
_RS28460
RR42
_RS28465
RR42
_RS28470
carbon source
Protocatechuic Acid (C)
-0.4
-1.1
-0.3
-0.1
N.D.
carbon source
Valeric (C)
-0.3
-0.9
-0.4
+0.1
N.D.
carbon source
Octanoic (C)
-0.1
-0.9
-0.1
-0.2
N.D.
carbon source
Protocatechuic Acid (C)
-0.4
-0.7
-0.2
+0.0
N.D.
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.4
-0.4
-0.4
-0.0
N.D.
carbon source
L-Lactate (C)
-0.2
-0.8
-0.4
+0.1
N.D.
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
+0.0
-0.3
-0.6
-0.3
N.D.
carbon source
Hexanoic (C)
-0.4
-0.4
-0.2
-0.2
N.D.
carbon source
Disodium Glutarate (C)
-0.3
-0.8
-0.1
+0.0
N.D.
carbon source
Azelaic (C)
-0.1
-0.6
-0.3
-0.1
N.D.
carbon source
D,L-Lactate (C)
-0.2
-0.8
-0.1
-0.0
N.D.
carbon source
Pimelic (C)
-0.1
-0.9
-0.2
+0.1
N.D.
carbon source
Azelaic (C)
-0.1
-0.4
-0.3
-0.2
N.D.
stress
R2A with D-Cycloserine 0.5 mg/ml
-0.0
-0.8
-0.2
+0.0
N.D.
carbon source
Suberic (C)
-0.1
-0.9
-0.1
+0.1
N.D.
carbon source
Pimelic (C)
-0.3
-0.6
+0.1
-0.1
N.D.
stress
R2A with Vancomycin 0.5 mg/ml
+0.1
-1.1
+0.0
+0.0
N.D.
stress
R2A with Nickel (II) chloride 0.35 mM
-0.1
-1.0
+0.2
+0.1
N.D.
stress
R2A with Vancomycin 0.5 mg/ml
+0.1
-0.4
-0.2
-0.4
N.D.
stress
R2A with Paraquat dichloride 0.064 mg/ml
+0.2
-0.8
-0.3
+0.1
N.D.
carbon source
Octanoic (C)
-0.1
-0.7
+0.2
+0.0
N.D.
carbon source
Ethanol (C)
-0.2
+0.2
-0.4
-0.1
N.D.
stress
R2A with Thallium(I) acetate 0.001 mg/ml
+0.2
-0.5
-0.3
+0.1
N.D.
carbon source
succinate (C)
+0.0
-0.6
+0.2
+0.1
N.D.
nitrogen source
L-Glutamine (N)
-0.2
-0.4
+0.1
+0.3
N.D.
stress
R2A with Nickel (II) chloride 0.5 mM
-0.2
+0.4
-0.4
+0.2
N.D.
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+0.2
-0.4
+0.3
-0.0
N.D.
carbon source
a-Ketoglutaric (C)
+0.2
-0.4
+0.3
-0.0
N.D.
stress
R2A with Cisplatin 0.001 mg/ml
+0.1
-0.4
+0.6
+0.2
N.D.
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
-0.2
+0.4
+0.3
-0.1
N.D.
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