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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Number of genes on each side:
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5
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS28320 and RR42_RS28325 are separated by 223 nucleotides
RR42_RS28325 and RR42_RS28330 are separated by 8 nucleotides
RR42_RS28330 and RR42_RS28335 are separated by 52 nucleotides
RR42_RS28335 and RR42_RS28340 are separated by 49 nucleotides
RR42_RS28320: RR42_RS28320 - porin, at 1,714,297 to 1,715,367
_RS28320
RR42_RS28325: RR42_RS28325 - 3-hydroxyacyl-CoA dehydrogenase, at 1,715,591 to 1,716,958
_RS28325
RR42_RS28330: RR42_RS28330 - enoyl-CoA hydratase, at 1,716,967 to 1,717,764
_RS28330
RR42_RS28335: RR42_RS28335 - ferredoxin, at 1,717,817 to 1,718,785
_RS28335
RR42_RS28340: RR42_RS28340 - phthalate 4,5-dioxygenase, at 1,718,835 to 1,720,118
_RS28340
Group
Condition
RR42
_RS28320
RR42
_RS28325
RR42
_RS28330
RR42
_RS28335
RR42
_RS28340
stress
R2A with Cobalt chloride 0.5 mM
+0.4
-0.0
-1.3
-0.4
-0.4
carbon source
Azelaic (C)
+0.0
-0.4
-0.7
-0.4
+0.0
carbon source
Dodecandioic (C)
+0.2
-0.5
-0.8
-0.3
+0.1
carbon source
L-Lactate (C)
+0.0
-0.1
-0.6
-0.3
-0.2
carbon source
L-Glutamine (C)
+0.1
-0.3
-0.8
+0.0
-0.1
stress
R2A with Nickel (II) chloride 0.35 mM
-0.1
-0.7
-0.6
+0.2
-0.0
stress
R2A with D-Cycloserine 0.5 mg/ml
+0.1
-0.1
-0.6
-0.3
-0.2
carbon source
Protocatechuic Acid (C)
+0.1
-0.4
-1.0
+0.0
+0.2
carbon source
adipate (C)
+0.1
-0.1
-1.0
-0.0
+0.1
stress
R2A with Chloride 300 mM
+0.1
+0.1
-0.8
-0.3
-0.1
carbon source
Hexanoic (C)
-0.0
-0.6
-0.6
+0.2
+0.0
carbon source
D,L-Lactate (C)
+0.2
-0.1
-0.6
-0.2
-0.2
carbon source
4-Hydroxybenzoic Acid (C)
+0.2
-0.2
-0.3
-0.4
-0.1
stress
R2A with Paraquat dichloride 0.064 mg/ml
+0.4
-0.4
-0.5
-0.1
-0.1
carbon source
L-Lactate (C)
+0.1
+0.1
-0.6
-0.4
+0.2
carbon source
L-Threonine (C)
+0.3
-0.3
-0.5
-0.1
+0.1
stress
R2A with Doxycycline hyclate 0.0001 mg/ml
+0.3
-0.1
-0.4
-0.4
+0.1
carbon source
Suberic (C)
-0.0
-0.5
-0.4
+0.2
+0.4
carbon source
Pimelic (C)
+0.2
-0.2
-0.4
+0.3
-0.0
nitrogen source
L-Lysine (N)
+0.1
+0.3
-1.0
+0.2
+0.1
lb
LB
-0.3
+0.1
-0.8
+0.3
+0.4
stress
R2A with Vancomycin 0.5 mg/ml
-0.1
-0.5
+0.6
-0.0
-0.2
nitrogen source
L-Glutamine (N)
+0.2
+0.2
-1.0
+0.4
+0.1
carbon source
Azelaic (C)
+0.2
+0.0
-0.9
+0.4
+0.1
nitrogen source
L-Leucine (N)
+0.1
+0.1
-0.6
+0.2
+0.2
stress
R2A with Lomefloxacin 0.00075 mM
-0.1
+0.1
+0.4
+0.5
-0.3
nitrogen source
Glucuronamide (N)
+0.0
+0.2
+0.4
+0.5
+0.1
temperature
R2A 23C
+0.1
+0.1
+0.4
+0.6
+0.1
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.2
+0.3
+0.7
+0.2
-0.0
stress
R2A with Lomefloxacin 0.001 mM
+0.1
+0.5
+0.5
+0.5
+0.1
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RR42_RS28330
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