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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS28120 and RR42_RS28125 are separated by 57 nucleotides
RR42_RS28125 and RR42_RS28130 are separated by 375 nucleotides
RR42_RS28130 and RR42_RS28135 are separated by 12 nucleotides
RR42_RS28135 and RR42_RS28140 are separated by 356 nucleotides
RR42_RS28120: RR42_RS28120 - molybdenum cofactor biosysynthesis protein, at 1,667,439 to 1,667,969
_RS28120
RR42_RS28125: RR42_RS28125 - hypothetical protein, at 1,668,027 to 1,668,299
_RS28125
RR42_RS28130: RR42_RS28130 - N-acylglucosamine 2-epimerase, at 1,668,675 to 1,669,814
_RS28130
RR42_RS28135: RR42_RS28135 - Crp/Fnr family transcriptional regulator, at 1,669,827 to 1,670,546
_RS28135
RR42_RS28140: RR42_RS28140 - hypothetical protein, at 1,670,903 to 1,671,541
_RS28140
Group
Condition
RR42
_RS28120
RR42
_RS28125
RR42
_RS28130
RR42
_RS28135
RR42
_RS28140
carbon source
Octanoic (C)
N.D.
-0.2
N.D.
-0.4
-0.9
nitrogen source
Glucuronamide (N)
N.D.
-0.7
N.D.
-0.4
-0.4
stress
R2A with Cephalothin 0.25 mg/ml
N.D.
-0.7
N.D.
+0.0
-0.5
nitrogen source
casaminos (N)
N.D.
-0.6
N.D.
-0.1
-0.3
stress
R2A with D-Cycloserine 0.5 mg/ml
N.D.
-1.1
N.D.
+0.2
-0.1
stress
R2A with Cisplatin 0.001 mg/ml
N.D.
-0.5
N.D.
-0.3
-0.2
oxygen_nitrate
exometabolites; 5% oxygen; 5 mM nitrate
N.D.
-0.4
N.D.
-0.2
-0.4
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
N.D.
+0.1
N.D.
-0.8
-0.3
carbon source
Carbon source D,L-Lactate 10 mM
N.D.
-0.8
N.D.
-0.1
+0.1
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
N.D.
-0.8
N.D.
+0.1
-0.1
temperature
R2A 23C
N.D.
+0.2
N.D.
-0.1
-0.9
stress
R2A with Lomefloxacin 0.001 mM
N.D.
-1.2
N.D.
-0.2
+0.7
nitrogen source
L-Isoleucine (N)
N.D.
+0.3
N.D.
+0.1
-0.8
stress
R2A with Doxycycline hyclate 0.0001 mg/ml
N.D.
+0.4
N.D.
-0.2
-0.5
carbon source
adipate (C)
N.D.
-0.6
N.D.
-0.1
+0.4
stress
R2A with Vancomycin 0.5 mg/ml
N.D.
-0.2
N.D.
+0.3
-0.4
carbon source
D,L-Lactate (C)
N.D.
-0.6
N.D.
+0.1
+0.3
carbon source
Pimelic (C)
N.D.
-0.6
N.D.
-0.2
+0.6
stress
R2A with Sisomicin 0.035 mg/ml
N.D.
-0.6
N.D.
-0.0
+0.6
lb
LB
N.D.
-0.7
N.D.
-0.1
+0.8
stress
R2A with Nickel (II) chloride 0.35 mM
N.D.
-0.8
N.D.
+0.1
+0.7
stress
R2A with Lomefloxacin 0.00075 mM
N.D.
+0.6
N.D.
+0.1
-0.6
carbon source
Protocatechuic Acid (C)
N.D.
+0.4
N.D.
+0.3
-0.5
carbon source
Dodecandioic (C)
N.D.
-0.4
N.D.
+0.3
+0.4
stress
R2A with copper (II) chloride 0.25 mM
N.D.
+0.4
N.D.
-0.2
+0.3
stress
R2A with nitrate 200 mM
N.D.
+0.5
N.D.
-0.1
+0.4
carbon source
L-Malic (C)
N.D.
+0.2
N.D.
-0.1
+0.7
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
N.D.
+0.5
N.D.
+0.2
+0.5
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
N.D.
+0.8
N.D.
-0.1
+0.8
stress
R2A with Cobalt chloride 0.3 mM
N.D.
+1.1
N.D.
+0.3
+0.4
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