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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS28110 and RR42_RS28115 are separated by 126 nucleotides
RR42_RS28115 and RR42_RS28120 are separated by 53 nucleotides
RR42_RS28120 and RR42_RS28125 are separated by 57 nucleotides
RR42_RS28125 and RR42_RS28130 are separated by 375 nucleotides
RR42_RS28110: RR42_RS28110 - phosphonate ABC transporter ATPase, at 1,665,328 to 1,666,017
_RS28110
RR42_RS28115: RR42_RS28115 - phosphonate metabolism protein PhnM, at 1,666,144 to 1,667,385
_RS28115
RR42_RS28120: RR42_RS28120 - molybdenum cofactor biosysynthesis protein, at 1,667,439 to 1,667,969
_RS28120
RR42_RS28125: RR42_RS28125 - hypothetical protein, at 1,668,027 to 1,668,299
_RS28125
RR42_RS28130: RR42_RS28130 - N-acylglucosamine 2-epimerase, at 1,668,675 to 1,669,814
_RS28130
Group
Condition
RR42
_RS28110
RR42
_RS28115
RR42
_RS28120
RR42
_RS28125
RR42
_RS28130
stress
R2A with Cobalt chloride 0.5 mM
-0.6
-0.4
N.D.
-0.6
N.D.
carbon source
D,L-Lactate (C)
-0.8
-0.1
N.D.
-0.6
N.D.
stress
R2A with D-Cycloserine 0.5 mg/ml
-0.2
+0.1
N.D.
-1.1
N.D.
stress
R2A with Lomefloxacin 0.001 mM
+0.2
-0.0
N.D.
-1.2
N.D.
stress
R2A with Cisplatin 0.001 mg/ml
-0.7
+0.2
N.D.
-0.5
N.D.
stress
R2A with Sisomicin 0.035 mg/ml
-0.5
+0.1
N.D.
-0.6
N.D.
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
-0.5
+0.0
N.D.
-0.5
N.D.
carbon source
Carbon source D,L-Lactate 10 mM
-0.0
-0.2
N.D.
-0.8
N.D.
carbon source
L-Asparagine (C)
-0.6
+0.0
N.D.
-0.3
N.D.
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.1
-0.0
N.D.
-0.8
N.D.
carbon source
Pimelic (C)
-0.2
+0.1
N.D.
-0.6
N.D.
stress
R2A with Nickel (II) chloride 0.35 mM
+0.3
-0.1
N.D.
-0.8
N.D.
lb
LB
+0.5
-0.4
N.D.
-0.7
N.D.
carbon source
adipate (C)
-0.1
+0.2
N.D.
-0.6
N.D.
stress
R2A with Cephalothin 0.25 mg/ml
-0.0
+0.2
N.D.
-0.7
N.D.
carbon source
D-Lactate (C)
-0.4
-0.2
N.D.
+0.3
N.D.
temperature
R2A 23C
-0.6
+0.1
N.D.
+0.2
N.D.
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.1
+0.3
N.D.
-0.6
N.D.
stress
R2A with copper (II) chloride 0.25 mM
-0.2
-0.3
N.D.
+0.4
N.D.
nitrogen source
casaminos (N)
+0.6
-0.0
N.D.
-0.6
N.D.
stress
R2A with Chloride 300 mM
-0.5
+0.0
N.D.
+0.6
N.D.
nitrogen source
L-Serine (N)
+0.5
+0.1
N.D.
-0.3
N.D.
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
+0.7
-0.1
N.D.
-0.2
N.D.
stress
R2A with nitrate 200 mM
-0.3
+0.1
N.D.
+0.5
N.D.
carbon source
Hexanoic (C)
-0.4
+0.2
N.D.
+0.6
N.D.
stress
R2A with Lomefloxacin 0.00075 mM
+0.1
-0.2
N.D.
+0.6
N.D.
stress
R2A with Nickel (II) chloride 0.5 mM
+0.7
+0.2
N.D.
-0.2
N.D.
carbon source
propionate (C)
+0.7
+0.1
N.D.
+0.0
N.D.
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.5
+0.1
N.D.
+0.8
N.D.
stress
R2A with Cobalt chloride 0.3 mM
+0.3
+0.1
N.D.
+1.1
N.D.
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