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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS27950 and RR42_RS27955 are separated by 179 nucleotides
RR42_RS27955 and RR42_RS27960 are separated by 59 nucleotides
RR42_RS27960 and RR42_RS27965 are separated by 43 nucleotides
RR42_RS27965 and RR42_RS27970 are separated by 95 nucleotides
RR42_RS27950: RR42_RS27950 - peptidylprolyl isomerase, at 1,633,697 to 1,634,101
_RS27950
RR42_RS27955: RR42_RS27955 - Short chain fatty acid transporter, at 1,634,281 to 1,635,672
_RS27955
RR42_RS27960: RR42_RS27960 - ornithine cyclodeaminase, at 1,635,732 to 1,636,724
_RS27960
RR42_RS27965: RR42_RS27965 - ferredoxin:oxidoreductase FAD/NAD(P)-binding protein, at 1,636,768 to 1,640,193
_RS27965
RR42_RS27970: RR42_RS27970 - LysR family transcriptional regulator, at 1,640,289 to 1,641,206
_RS27970
Group
Condition
RR42
_RS27950
RR42
_RS27955
RR42
_RS27960
RR42
_RS27965
RR42
_RS27970
stress
R2A with Cobalt chloride 0.3 mM
-2.0
+0.0
-0.4
-0.1
+0.2
stress
R2A with Cobalt chloride 0.5 mM
-1.6
-0.1
-0.1
+0.2
-0.2
stress
R2A with D-Cycloserine 0.5 mg/ml
-0.7
+0.0
-0.3
-0.1
-0.4
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.8
-0.3
-0.2
-0.2
+0.0
carbon source
L-Histidine (C)
-1.1
-0.3
-0.0
+0.1
-0.1
carbon source
Dodecandioic (C)
-0.8
-0.1
-0.0
+0.1
-0.2
carbon source
Protocatechuic Acid (C)
-0.1
-0.4
-0.4
-0.2
+0.0
carbon source
L-Alanine (C)
-1.0
-0.1
+0.0
+0.1
-0.0
nitrogen source
L-Asparagine (N)
-0.8
-0.4
+0.0
+0.2
-0.1
nitrogen source
L-Tryptophan (N)
-0.8
-0.1
-0.1
+0.1
-0.1
carbon source
L-Threonine (C)
-0.7
+0.0
-0.1
-0.1
-0.1
stress
R2A with Chloride 300 mM
-0.9
+0.2
-0.2
+0.1
-0.1
stress
R2A with Nickel (II) chloride 0.5 mM
-1.0
+0.1
+0.0
+0.0
-0.2
carbon source
Azelaic (C)
-0.4
-0.5
-0.2
-0.2
+0.3
carbon source
D-Gluconic Acid (C)
-0.9
-0.2
+0.1
+0.1
-0.1
carbon source
Valeric (C)
-0.9
-0.1
+0.2
+0.1
-0.2
carbon source
D-Fructose (C)
-0.9
-0.0
+0.1
+0.0
-0.1
nitrogen source
L-Glutamine (N)
-0.7
+0.1
+0.0
-0.1
-0.1
carbon source
Valeric (C)
-0.9
-0.1
+0.1
+0.0
-0.1
carbon source
adipate (C)
-1.0
+0.1
+0.1
-0.1
+0.1
stress
R2A with Vancomycin 0.5 mg/ml
-0.6
-0.2
+0.0
+0.1
-0.1
nitrogen source
L-Leucine (N)
-0.8
-0.0
-0.0
+0.2
+0.0
stress
R2A with Nickel (II) chloride 0.25 mM
-0.6
-0.1
+0.2
-0.0
-0.2
carbon source
Disodium Glutarate (C)
-1.1
-0.1
+0.2
+0.1
+0.3
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
-0.5
-0.3
+0.3
+0.1
-0.2
carbon source
L-Phenylalanine (C)
-0.7
-0.0
+0.1
+0.2
-0.1
carbon source
D-Lactate (C)
-0.7
+0.2
-0.0
+0.1
+0.1
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.4
-0.3
-0.1
-0.1
-0.1
carbon source
L-Malic (C)
-0.5
+0.1
+0.2
+0.1
-0.2
stress
R2A with Paraquat dichloride 0.064 mg/ml
+0.5
-0.1
+0.1
+0.2
+0.3
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RR42_RS27960
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