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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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5
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS27835 and RR42_RS27840 are separated by 37 nucleotides
RR42_RS27840 and RR42_RS27845 are separated by 65 nucleotides
RR42_RS27845 and RR42_RS27850 are separated by 63 nucleotides
RR42_RS27850 and RR42_RS27855 are separated by 21 nucleotides
RR42_RS27835: RR42_RS27835 - betaine-aldehyde dehydrogenase, at 1,608,708 to 1,610,168
_RS27835
RR42_RS27840: RR42_RS27840 - 3,4-dihydroxyphenylacetate 2,3-dioxygenase, at 1,610,206 to 1,611,054
_RS27840
RR42_RS27845: RR42_RS27845 - 5-carboxymethyl-2-hydroxymuconate isomerase, at 1,611,120 to 1,611,509
_RS27845
RR42_RS27850: RR42_RS27850 - 2-oxo-hepta-3-ene-1,7-dioate hydratase, at 1,611,573 to 1,612,376
_RS27850
RR42_RS27855: RR42_RS27855 - 4-hydroxy-2-oxo-heptane-1,7-dioate aldolase, at 1,612,398 to 1,613,201
_RS27855
Group
Condition
RR42
_RS27835
RR42
_RS27840
RR42
_RS27845
RR42
_RS27850
RR42
_RS27855
stress
R2A with Paraquat dichloride 0.064 mg/ml
-0.2
-0.2
-0.3
-0.8
-0.3
stress
R2A with Nickel (II) chloride 0.35 mM
+0.2
-0.1
-0.3
-0.5
-0.9
lb
LB
-0.7
+0.2
-1.0
+0.4
-0.3
stress
R2A with Vancomycin 0.5 mg/ml
+0.1
-0.4
-0.6
+0.1
-0.6
stress
R2A with copper (II) chloride 0.25 mM
-0.3
-0.5
+0.3
-0.2
-0.7
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.3
-0.3
-0.1
+0.1
-0.7
carbon source
Pimelic (C)
-0.1
-0.1
-0.2
+0.2
-0.7
stress
R2A with Nickel (II) chloride 0.5 mM
+0.1
-0.4
-0.4
+0.7
-0.9
carbon source
Protocatechuic Acid (C)
-0.6
+0.3
-0.4
+0.1
-0.1
nitrogen source
Glucuronamide (N)
-0.4
+0.0
-0.2
-0.3
+0.4
stress
R2A with nitrate 150 mM
+0.2
-0.2
+0.0
+0.2
-0.7
stress
R2A with sodium fluoride 100 mM
+0.2
-0.1
+0.2
-0.3
-0.5
carbon source
Suberic (C)
-0.1
-0.1
-0.8
+0.3
+0.1
nitrogen source
L-Glutamine (N)
-0.5
-0.4
-0.5
+0.1
+0.9
stress
R2A with Cobalt chloride 0.5 mM
+0.3
-0.3
-0.7
+0.1
+0.2
stress
R2A with Dimethyl Sulfoxide 5 vol%
-0.2
-0.4
+0.2
+0.3
-0.3
carbon source
Valeric (C)
+0.1
-0.3
-0.0
+0.5
-0.6
stress
R2A with Lomefloxacin 0.001 mM
+0.4
-0.4
+0.3
+0.2
-0.6
nitrogen source
L-Isoleucine (N)
+0.2
+0.0
-0.2
-0.5
+0.4
carbon source
L-Asparagine (C)
+0.1
+0.0
+0.2
-0.7
+0.3
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
-0.1
+0.2
+0.0
-0.8
+0.7
carbon source
Pimelic (C)
-0.3
+0.3
-0.0
+0.6
-0.5
r2a
R2A
+0.1
-0.4
+0.3
+0.2
-0.2
nitrogen source
L-Threonine (N)
+0.1
-0.5
-0.0
+0.7
-0.1
carbon source
adipate (C)
-0.4
+0.2
-0.1
+0.4
+0.2
nitrogen source
L-Lysine (N)
+0.3
-0.4
+0.1
+0.4
+0.2
nitrogen source
nitrate (N)
+0.2
+0.1
-0.2
+0.1
+0.7
carbon source
Carbon source Phenylacetic 2.5 mM
+0.0
-0.1
+0.5
+0.3
+0.4
carbon source
L-Proline (C)
-0.0
-0.1
+0.4
+0.7
+0.2
nitrogen source
L-Serine (N)
+0.3
+0.0
+0.1
+0.5
+0.4
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RR42_RS27845
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