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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS27760 and RR42_RS27765 are separated by 243 nucleotides
RR42_RS27765 and RR42_RS27770 are separated by 114 nucleotides
RR42_RS27770 and RR42_RS27775 are separated by 29 nucleotides
RR42_RS27775 and RR42_RS27780 are separated by 133 nucleotides
RR42_RS27760: RR42_RS27760 - endonuclease, at 1,589,713 to 1,591,758
_RS27760
RR42_RS27765: RR42_RS27765 - haloacid dehalogenase, at 1,592,002 to 1,592,625
_RS27765
RR42_RS27770: RR42_RS27770 - CDP-diacylglycerol--serine O-phosphatidyltransferase, at 1,592,740 to 1,593,372
_RS27770
RR42_RS27775: RR42_RS27775 - phospholipase, at 1,593,402 to 1,595,606
_RS27775
RR42_RS27780: RR42_RS27780 - betaine-aldehyde dehydrogenase, at 1,595,740 to 1,597,191
_RS27780
Group
Condition
RR42
_RS27760
RR42
_RS27765
RR42
_RS27770
RR42
_RS27775
RR42
_RS27780
nitrogen source
L-Glutamine (N)
-0.1
-1.3
-0.3
-0.0
+0.1
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.1
-0.6
-0.6
-0.1
-0.2
stress
R2A with Chlorite 4 mM
+0.1
-0.3
-0.5
-0.0
-0.6
carbon source
Azelaic (C)
-0.4
-0.7
-0.3
-0.2
+0.3
stress
R2A with Lomefloxacin 0.001 mM
-0.0
-0.3
-0.8
-0.1
-0.0
stress
R2A with Nickel (II) chloride 0.35 mM
-0.1
-0.6
-0.4
-0.1
-0.0
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
+0.1
-0.9
+0.3
+0.0
-0.3
carbon source
Protocatechuic Acid (C)
-0.3
-0.4
+0.1
+0.2
-0.3
nitrogen source
D-Alanine (N)
-0.3
+0.4
-0.7
+0.0
-0.1
nitrogen source
Glucuronamide (N)
-0.2
-0.8
+0.1
+0.1
+0.1
carbon source
Ethanol (C)
+0.1
+0.3
-0.3
-0.3
-0.3
stress
R2A with Zinc 0.1 mM
+0.2
-0.5
+0.2
+0.0
-0.3
carbon source
L-Asparagine (C)
-0.1
+0.6
-0.2
-0.2
-0.4
carbon source
D-Gluconic Acid (C)
-0.1
+0.6
-0.6
-0.1
-0.1
carbon source
L-Lactate (C)
+0.1
-0.7
+0.3
-0.1
+0.0
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.5
-0.4
-0.2
-0.0
-0.1
carbon source
L-Malic (C)
+0.1
+0.6
-0.5
-0.2
-0.2
carbon source
adipate (C)
-0.1
+0.1
-0.7
+0.3
+0.3
stress
R2A with Vancomycin 0.5 mg/ml
+0.3
+0.5
-0.3
-0.1
-0.2
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+0.2
+0.5
-0.2
-0.1
-0.1
stress
R2A with Cobalt chloride 0.5 mM
-0.2
+0.3
+0.5
-0.1
-0.1
stress
R2A with Paraquat dichloride 0.064 mg/ml
+0.4
-0.2
+0.1
-0.1
+0.3
carbon source
Dodecandioic (C)
-0.1
+0.6
-0.2
-0.0
+0.2
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
-0.1
+0.7
+0.1
+0.1
-0.3
stress
R2A with Cobalt chloride 0.3 mM
-0.1
+0.2
+0.3
+0.2
-0.2
r2a
R2A
+0.2
+0.7
-0.3
-0.0
+0.1
carbon source
D,L-Lactate (C)
-0.3
+0.8
+0.1
-0.2
+0.2
stress
R2A with copper (II) chloride 0.25 mM
+0.3
-0.3
+0.3
+0.2
+0.3
carbon source
Valeric (C)
+0.2
+0.5
+0.5
+0.1
-0.2
lb
LB
+0.1
+0.4
+0.0
+0.0
+0.6
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