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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Number of genes on each side:
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS27720 and RR42_RS27725 are separated by 5 nucleotides
RR42_RS27725 and RR42_RS27730 are separated by 102 nucleotides
RR42_RS27730 and RR42_RS27735 are separated by 229 nucleotides
RR42_RS27735 and RR42_RS27740 are separated by 140 nucleotides
RR42_RS27720: RR42_RS27720 - MFS transporter, at 1,582,574 to 1,583,896
_RS27720
RR42_RS27725: RR42_RS27725 - GntR family transcriptional regulator, at 1,583,902 to 1,584,612
_RS27725
RR42_RS27730: RR42_RS27730 - 3-carboxy-cis,cis-muconate cycloisomerase, at 1,584,715 to 1,585,674
_RS27730
RR42_RS27735: RR42_RS27735 - GntR family transcriptional regulator, at 1,585,904 to 1,586,632
_RS27735
RR42_RS27740: RR42_RS27740 - fumarate hydratase, at 1,586,773 to 1,588,266
_RS27740
Group
Condition
RR42
_RS27720
RR42
_RS27725
RR42
_RS27730
RR42
_RS27735
RR42
_RS27740
carbon source
adipate (C)
+0.1
-0.6
-0.2
-2.4
+0.2
carbon source
Pimelic (C)
+0.0
-0.6
+0.0
-1.8
-0.2
carbon source
Protocatechuic Acid (C)
+0.2
-0.6
-0.1
-1.6
-0.1
carbon source
adipate (C)
+0.3
-0.2
-0.1
-2.1
-0.1
carbon source
Octanoic (C)
-0.1
-0.5
-0.1
-1.4
-0.0
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+0.2
-0.9
-0.2
-0.9
-0.2
carbon source
Pimelic (C)
+0.1
+0.0
+0.1
-2.2
-0.0
carbon source
L-Proline (C)
-0.1
-0.7
-0.3
-0.8
-0.1
carbon source
Octanoic (C)
-0.1
-0.4
-0.3
-1.2
+0.2
carbon source
Protocatechuic Acid (C)
+0.1
-0.3
+0.2
-1.4
-0.3
carbon source
a-Ketoglutaric (C)
-0.2
-0.3
-0.1
-0.8
-0.0
carbon source
Suberic (C)
+0.3
-0.9
+0.1
-0.8
-0.0
carbon source
L-Alanine (C)
-0.1
-0.8
-0.0
-0.4
-0.1
nitrogen source
L-Lysine (N)
+0.1
-0.9
+0.1
-0.4
-0.2
carbon source
Heptanoic (C)
-0.0
-0.5
-0.2
-0.5
+0.1
nitrogen source
D-Alanine (N)
+0.2
-0.3
-0.1
-1.0
-0.1
lb
LB
-0.2
+0.2
-0.1
-1.4
+0.3
carbon source
Azelaic (C)
+0.1
-0.8
-0.0
-0.5
+0.1
carbon source
Dodecandioic (C)
-0.1
-0.7
-0.0
-0.6
+0.3
nitrogen source
nitrite (N)
+0.1
+0.3
+0.0
-1.4
-0.0
carbon source
succinate (C)
+0.1
-0.9
-0.2
+0.1
-0.0
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.3
-0.6
+0.0
-0.4
-0.2
carbon source
Dodecandioic (C)
-0.1
-0.4
+0.0
-0.6
+0.2
stress
R2A with Polymyxin B sulfate 0.005 mg/ml
-0.2
-0.9
+0.1
+0.2
-0.1
stress
R2A with Nickel (II) chloride 0.35 mM
+0.2
-1.0
+0.1
+0.1
-0.1
stress
R2A with Lomefloxacin 0.001 mM
+0.3
-1.0
+0.0
+0.1
+0.1
stress
R2A with Lomefloxacin 0.00075 mM
-0.2
-0.6
-0.0
+0.5
+0.1
stress
R2A with Cobalt chloride 0.5 mM
+0.2
-0.6
-0.2
+0.2
+0.1
carbon source
L-Malic (C)
+0.0
+0.4
-0.1
-0.6
+0.2
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.3
+0.1
+0.4
-0.5
+0.1
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