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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS27700 and RR42_RS27705 are separated by 73 nucleotides
RR42_RS27705 and RR42_RS27710 are separated by 273 nucleotides
RR42_RS27710 and RR42_RS27715 are separated by 203 nucleotides
RR42_RS27715 and RR42_RS27720 are separated by 17 nucleotides
RR42_RS27700: RR42_RS27700 - hypothetical protein, at 1,579,341 to 1,579,586
_RS27700
RR42_RS27705: RR42_RS27705 - NAD-dependent deacetylase, at 1,579,660 to 1,580,520
_RS27705
RR42_RS27710: RR42_RS27710 - LysR family transcriptional regulator, at 1,580,794 to 1,581,705
_RS27710
RR42_RS27715: RR42_RS27715 - hypothetical protein, at 1,581,909 to 1,582,556
_RS27715
RR42_RS27720: RR42_RS27720 - MFS transporter, at 1,582,574 to 1,583,896
_RS27720
Group
Condition
RR42
_RS27700
RR42
_RS27705
RR42
_RS27710
RR42
_RS27715
RR42
_RS27720
lb
LB
-4.5
+0.5
-1.3
+0.6
-0.2
carbon source
L-Lactate (C)
-1.2
-0.7
-0.5
-0.0
-0.0
carbon source
Carbon source Phenylacetic 2.5 mM
-1.0
+0.0
-0.7
-0.5
-0.0
carbon source
Carbon source Phenylacetic 2.5 mM
-0.8
-0.3
-0.7
-0.3
-0.1
stress
R2A with Lomefloxacin 0.00075 mM
-0.8
+0.2
-0.8
-0.3
-0.2
carbon source
L-Leucine (C)
-1.0
+0.1
-0.5
+0.1
-0.3
carbon source
L-Asparagine (C)
-1.3
+0.5
-0.6
+0.2
-0.3
stress
R2A with Nickel (II) chloride 0.5 mM
-0.5
-0.8
-0.1
+0.4
-0.3
carbon source
pyruvate (C)
-0.5
+0.4
-1.1
+0.1
-0.0
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.7
+0.4
-0.9
-0.2
+0.2
carbon source
Heptanoic (C)
-1.1
-0.8
+0.2
+0.4
+0.2
nitrogen source
L-Serine (N)
-1.1
+0.5
-0.5
-0.1
-0.0
nitrogen source
L-Valine (N)
-1.2
+0.3
+0.1
-0.2
-0.2
stress
R2A with Cisplatin 0.001 mg/ml
-1.6
-0.1
+0.8
-0.1
-0.1
stress
R2A with Vancomycin 0.5 mg/ml
-0.9
+0.5
-0.2
-0.4
-0.1
carbon source
Pimelic (C)
-0.9
-0.2
+0.4
-0.4
+0.1
carbon source
L-Alanine (C)
-0.6
+0.7
-1.0
-0.0
+0.1
carbon source
D-Fructose (C)
-0.9
+0.3
-0.2
+0.4
-0.3
carbon source
Dodecandioic (C)
+0.4
+0.6
-1.3
-0.0
-0.1
nitrogen source
L-Lysine (N)
-1.1
+0.7
-0.6
+0.3
+0.1
carbon source
Disodium Glutarate (C)
-1.1
-0.2
+1.0
-0.3
+0.1
stress
R2A with Paraquat dichloride 0.064 mg/ml
-1.1
+0.4
-0.3
+0.4
+0.1
carbon source
L-Alanine (C)
+0.3
+0.5
-1.4
+0.4
-0.1
carbon source
D-Gluconic Acid (C)
-0.7
+0.6
-0.4
+0.2
-0.0
nitrogen source
L-Leucine (N)
-0.4
+0.9
-0.4
+0.2
-0.1
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.3
+1.1
-0.7
-0.2
+0.3
stress
R2A with Lomefloxacin 0.001 mM
-1.2
+1.4
-0.0
-0.0
+0.3
carbon source
Protocatechuic Acid (C)
-0.4
+1.2
+0.2
+0.1
+0.2
carbon source
Protocatechuic Acid (C)
+0.0
+1.1
+0.7
-0.3
+0.1
stress
R2A with Vancomycin 0.5 mg/ml
+1.0
+0.8
+1.0
+0.2
-0.1
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