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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS27615 and RR42_RS27620 are separated by 47 nucleotides
RR42_RS27620 and RR42_RS27625 are separated by 123 nucleotides
RR42_RS27625 and RR42_RS27630 are separated by 268 nucleotides
RR42_RS27630 and RR42_RS27635 are separated by 454 nucleotides
RR42_RS27615: RR42_RS27615 - alpha/beta hydrolase, at 1,559,831 to 1,560,718
_RS27615
RR42_RS27620: RR42_RS27620 - AP endonuclease, at 1,560,766 to 1,561,821
_RS27620
RR42_RS27625: RR42_RS27625 - TetR family transcriptional regulator, at 1,561,945 to 1,562,544
_RS27625
RR42_RS27630: RR42_RS27630 - lipase, at 1,562,813 to 1,563,853
_RS27630
RR42_RS27635: RR42_RS27635 - hypothetical protein, at 1,564,308 to 1,564,529
_RS27635
Group
Condition
RR42
_RS27615
RR42
_RS27620
RR42
_RS27625
RR42
_RS27630
RR42
_RS27635
carbon source
Disodium Glutarate (C)
-0.2
-0.2
-1.2
-0.3
N.D.
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.1
-0.2
-1.5
-0.1
N.D.
stress
R2A with Cobalt chloride 0.3 mM
+0.0
+0.0
-1.7
-0.1
N.D.
carbon source
Octanoic (C)
-0.1
-0.5
-0.8
-0.2
N.D.
carbon source
Carbon source Phenylacetic 2.5 mM
-0.0
+0.0
-1.5
+0.0
N.D.
carbon source
L-Leucine (C)
-0.2
+0.1
-1.1
-0.1
N.D.
carbon source
D,L-Lactate (C)
-0.3
+0.1
-1.0
+0.0
N.D.
carbon source
Dodecandioic (C)
-0.4
+0.2
-0.7
-0.3
N.D.
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+0.1
+0.3
-1.3
-0.2
N.D.
nitrogen source
L-Phenylalanine (N)
-0.5
+0.2
-1.0
+0.2
N.D.
carbon source
propionate (C)
-0.2
-0.1
-0.8
-0.0
N.D.
carbon source
succinate (C)
-0.3
+0.2
-1.1
+0.1
N.D.
nitrogen source
L-Serine (N)
-0.3
+0.2
-0.8
-0.2
N.D.
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+0.2
-0.2
-1.0
-0.0
N.D.
carbon source
Pimelic (C)
-0.1
+0.1
-1.0
+0.0
N.D.
stress
R2A with Vancomycin 0.5 mg/ml
-0.2
-0.0
-0.9
+0.1
N.D.
carbon source
Heptanoic (C)
-0.4
-0.0
-0.6
+0.1
N.D.
nitrogen source
L-Valine (N)
-0.1
+0.3
-0.9
-0.1
N.D.
nitrogen source
L-Citrulline (N)
-0.3
+0.2
-0.5
-0.1
N.D.
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.3
-0.0
-0.6
-0.2
N.D.
stress
R2A with Nickel (II) chloride 0.5 mM
-0.2
+0.4
-0.4
-0.4
N.D.
carbon source
L-Asparagine (C)
+0.0
+0.1
-1.0
+0.3
N.D.
stress
R2A with Paraquat dichloride 0.064 mg/ml
-0.4
+0.1
-0.4
+0.2
N.D.
stress
R2A with Lomefloxacin 0.001 mM
+0.6
+0.2
-0.7
-0.5
N.D.
stress
R2A with Vancomycin 0.5 mg/ml
-0.3
-0.0
-0.5
+0.4
N.D.
carbon source
Hexanoic (C)
-0.1
+0.0
-0.7
+0.5
N.D.
nitrogen source
L-Glutamine (N)
-0.1
-0.2
-0.4
+0.7
N.D.
stress
R2A with Nickel (II) chloride 0.25 mM
-0.1
-0.1
+0.6
+0.5
N.D.
nitrogen source
D-Alanine (N)
+0.0
+0.2
+0.6
+0.3
N.D.
lb
LB
+0.8
+0.4
+0.6
-0.3
N.D.
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