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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS27605 and RR42_RS27610 are separated by 49 nucleotides
RR42_RS27610 and RR42_RS27615 are separated by 266 nucleotides
RR42_RS27615 and RR42_RS27620 are separated by 47 nucleotides
RR42_RS27620 and RR42_RS27625 are separated by 123 nucleotides
RR42_RS27605: RR42_RS27605 - hypothetical protein, at 1,557,404 to 1,558,237
_RS27605
RR42_RS27610: RR42_RS27610 - MFS transporter, at 1,558,287 to 1,559,564
_RS27610
RR42_RS27615: RR42_RS27615 - alpha/beta hydrolase, at 1,559,831 to 1,560,718
_RS27615
RR42_RS27620: RR42_RS27620 - AP endonuclease, at 1,560,766 to 1,561,821
_RS27620
RR42_RS27625: RR42_RS27625 - TetR family transcriptional regulator, at 1,561,945 to 1,562,544
_RS27625
Group
Condition
RR42
_RS27605
RR42
_RS27610
RR42
_RS27615
RR42
_RS27620
RR42
_RS27625
stress
R2A with Cobalt chloride 0.3 mM
-0.2
+0.1
+0.0
+0.0
-1.7
carbon source
Octanoic (C)
+0.0
-0.4
-0.1
-0.5
-0.8
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.1
+0.1
+0.1
-0.2
-1.5
carbon source
Disodium Glutarate (C)
+0.2
-0.1
-0.2
-0.2
-1.2
carbon source
Disodium Glutarate (C)
-0.5
+0.0
-0.3
-0.2
-0.5
carbon source
Dodecandioic (C)
-0.5
-0.1
-0.4
+0.2
-0.7
carbon source
Octanoic (C)
-0.3
-0.4
-0.4
-0.3
-0.1
nitrogen source
L-Phenylalanine (N)
-0.1
+0.1
-0.5
+0.2
-1.0
carbon source
Carbon source Phenylacetic 2.5 mM
+0.0
+0.1
-0.0
+0.0
-1.5
stress
R2A with Nickel (II) chloride 0.25 mM
-0.5
-0.1
-0.2
+0.1
-0.7
carbon source
Heptanoic (C)
+0.0
-0.3
-0.4
-0.0
-0.6
carbon source
D,L-Lactate (C)
+0.3
-0.3
-0.3
+0.1
-1.0
carbon source
succinate (C)
+0.1
+0.1
-0.3
+0.2
-1.1
nitrogen source
casaminos (N)
-0.6
+0.1
-0.1
+0.0
-0.5
carbon source
Valeric (C)
-0.3
+0.1
+0.1
-0.1
-0.8
carbon source
L-Leucine (C)
+0.1
+0.1
-0.2
+0.1
-1.1
nitrogen source
L-Serine (N)
+0.0
+0.0
-0.3
+0.2
-0.8
carbon source
adipate (C)
-0.6
+0.1
-0.4
-0.2
+0.3
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+0.2
+0.2
+0.2
-0.2
-1.0
carbon source
L-Asparagine (C)
+0.2
+0.3
+0.0
+0.1
-1.0
stress
R2A with Vancomycin 0.5 mg/ml
+0.2
+0.3
-0.3
-0.0
-0.5
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+0.8
+0.0
+0.1
+0.3
-1.3
nitrogen source
L-Valine (N)
+0.4
+0.3
-0.1
+0.3
-0.9
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
+0.4
+0.2
-0.0
-0.1
-0.6
stress
R2A with Lomefloxacin 0.001 mM
-0.2
+0.1
+0.6
+0.2
-0.7
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
+0.2
+0.6
-0.2
+0.1
-0.3
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.5
+0.2
+0.3
-0.0
-0.6
stress
R2A with A22 0.01 mg/ml
+0.8
+0.2
-0.1
-0.1
-0.2
carbon source
Protocatechuic Acid (C)
+0.9
+0.2
+0.3
+0.1
-0.0
lb
LB
-0.5
+0.4
+0.8
+0.4
+0.6
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