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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS27590 and RR42_RS27595 are separated by 288 nucleotides
RR42_RS27595 and RR42_RS27600 are separated by 460 nucleotides
RR42_RS27600 and RR42_RS27605 are separated by 205 nucleotides
RR42_RS27605 and RR42_RS27610 are separated by 49 nucleotides
RR42_RS27590: RR42_RS27590 - amino acid transporter, at 1,555,266 to 1,555,910
_RS27590
RR42_RS27595: RR42_RS27595 - hypothetical protein, at 1,556,199 to 1,556,441
_RS27595
RR42_RS27600: RR42_RS27600 - hypothetical protein, at 1,556,902 to 1,557,198
_RS27600
RR42_RS27605: RR42_RS27605 - hypothetical protein, at 1,557,404 to 1,558,237
_RS27605
RR42_RS27610: RR42_RS27610 - MFS transporter, at 1,558,287 to 1,559,564
_RS27610
Group
Condition
RR42
_RS27590
RR42
_RS27595
RR42
_RS27600
RR42
_RS27605
RR42
_RS27610
lb
LB
-0.2
-2.1
N.D.
-0.5
+0.4
stress
R2A with Vancomycin 0.5 mg/ml
-0.3
-0.9
N.D.
-0.0
-0.1
stress
R2A with Nickel (II) chloride 0.25 mM
-0.6
-0.4
N.D.
-0.3
-0.0
stress
R2A with Lomefloxacin 0.001 mM
+0.1
-1.2
N.D.
-0.2
+0.1
stress
R2A with nitrate 200 mM
-0.3
-0.4
N.D.
-0.5
+0.0
stress
R2A with nitrate 150 mM
-0.1
-0.7
N.D.
-0.1
-0.1
stress
R2A with Nickel (II) chloride 0.25 mM
-0.3
+0.3
N.D.
-0.5
-0.1
stress
R2A with Nickel (II) chloride 0.35 mM
+0.4
-0.6
N.D.
-0.1
-0.2
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
-0.0
-1.2
N.D.
+0.2
+0.6
nitrogen source
casaminos (N)
-0.2
+0.2
N.D.
-0.6
+0.1
carbon source
propionate (C)
-0.4
-0.5
N.D.
+0.2
+0.2
stress
R2A with Vancomycin 0.5 mg/ml
-0.1
-0.8
N.D.
+0.2
+0.3
nitrogen source
L-Leucine (N)
-0.1
+0.4
N.D.
-0.6
-0.0
nitrogen source
L-Asparagine (N)
-0.3
-0.5
N.D.
+0.3
+0.3
carbon source
butyrate (C)
-0.2
-0.5
N.D.
+0.3
+0.1
nitrogen source
L-Valine (N)
-0.4
-0.3
N.D.
+0.4
+0.3
carbon source
L-Leucine (C)
-0.6
+0.3
N.D.
+0.1
+0.1
carbon source
D,L-Lactate (C)
-0.3
+0.2
N.D.
+0.3
-0.3
r2a
R2A
-0.3
+0.3
N.D.
-0.3
+0.3
carbon source
Disodium Glutarate (C)
-0.1
+0.8
N.D.
-0.5
+0.0
carbon source
pyruvate (C)
-0.3
+0.3
N.D.
+0.4
-0.0
carbon source
L-Leucine (C)
-0.3
+0.9
N.D.
+0.3
-0.1
carbon source
L-Tryptophan (C)
-0.0
+0.6
N.D.
+0.3
+0.2
temperature
R2A 37C
+0.1
+0.6
N.D.
+0.3
+0.1
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+0.0
+0.7
N.D.
+0.2
+0.2
stress
R2A with D-Cycloserine 0.5 mg/ml
+0.4
+0.1
N.D.
+0.4
+0.4
stress
R2A with copper (II) chloride 0.25 mM
+0.4
+0.2
N.D.
+0.4
+0.3
stress
R2A with Zinc 0.1 mM
+0.5
+0.1
N.D.
+0.6
+0.1
stress
R2A with A22 0.01 mg/ml
+0.0
+0.4
N.D.
+0.8
+0.2
carbon source
Protocatechuic Acid (C)
+0.1
+0.3
N.D.
+0.9
+0.2
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