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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS27315 and RR42_RS27320 are separated by 29 nucleotides
RR42_RS27320 and RR42_RS27325 are separated by 101 nucleotides
RR42_RS27325 and RR42_RS27330 are separated by 202 nucleotides
RR42_RS27330 and RR42_RS27335 are separated by 83 nucleotides
RR42_RS27315: RR42_RS27315 - ferredoxin, at 1,482,433 to 1,482,786
_RS27315
RR42_RS27320: RR42_RS27320 - ferredoxin, at 1,482,816 to 1,483,184
_RS27320
RR42_RS27325: RR42_RS27325 - aldehyde dehydrogenase, at 1,483,286 to 1,484,017
_RS27325
RR42_RS27330: RR42_RS27330 - ornithine cyclodeaminase, at 1,484,220 to 1,485,152
_RS27330
RR42_RS27335: RR42_RS27335 - ornithine cyclodeaminase, at 1,485,236 to 1,485,988
_RS27335
Group
Condition
RR42
_RS27315
RR42
_RS27320
RR42
_RS27325
RR42
_RS27330
RR42
_RS27335
lb
LB
+0.1
-4.2
N.D.
-0.5
N.D.
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.3
-1.9
N.D.
+0.0
N.D.
stress
R2A with Paraquat dichloride 0.064 mg/ml
+0.5
-2.1
N.D.
-0.3
N.D.
stress
R2A with Zinc 0.1 mM
-0.3
-1.6
N.D.
+0.1
N.D.
stress
R2A with Vancomycin 0.5 mg/ml
+0.0
-1.6
N.D.
-0.2
N.D.
carbon source
Protocatechuic Acid (C)
+0.3
-1.4
N.D.
-0.6
N.D.
carbon source
Dodecandioic (C)
-0.2
-1.6
N.D.
+0.2
N.D.
stress
R2A with nitrate 200 mM
-0.3
-0.7
N.D.
-0.6
N.D.
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
-0.6
-0.1
N.D.
-0.9
N.D.
stress
R2A with A22 0.01 mg/ml
+0.2
-1.1
N.D.
-0.6
N.D.
carbon source
Azelaic (C)
-0.0
-1.4
N.D.
+0.0
N.D.
carbon source
L-Malic (C)
+0.1
-1.1
N.D.
-0.3
N.D.
carbon source
Suberic (C)
-0.0
-1.3
N.D.
+0.1
N.D.
stress
R2A with Nickel (II) chloride 0.35 mM
+0.2
-0.7
N.D.
-0.6
N.D.
carbon source
succinate (C)
+0.2
-1.1
N.D.
-0.1
N.D.
stress
R2A with Chloride 300 mM
+0.4
-1.3
N.D.
-0.1
N.D.
carbon source
adipate (C)
+0.0
-1.1
N.D.
+0.1
N.D.
r2a
R2A
+0.2
-1.2
N.D.
+0.2
N.D.
carbon source
Azelaic (C)
-0.7
-0.5
N.D.
+0.4
N.D.
carbon source
Octanoic (C)
-0.5
-0.6
N.D.
+0.4
N.D.
carbon source
Protocatechuic Acid (C)
-0.4
-0.6
N.D.
+0.4
N.D.
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
-0.2
-0.7
N.D.
+0.4
N.D.
stress
R2A with Polymyxin B sulfate 0.005 mg/ml
+0.2
-0.8
N.D.
+0.2
N.D.
stress
R2A with Nickel (II) chloride 0.35 mM
+0.1
-0.8
N.D.
+0.3
N.D.
stress
R2A with Cephalothin 0.25 mg/ml
-0.6
+0.5
N.D.
-0.1
N.D.
nitrogen source
casaminos (N)
-0.4
+0.7
N.D.
+0.1
N.D.
nitrogen source
L-Glutamine (N)
-0.3
+1.3
N.D.
-0.5
N.D.
carbon source
Carbon source D,L-Lactate 10 mM
+0.1
+1.2
N.D.
-0.3
N.D.
nitrogen source
L-Lysine (N)
+0.2
+0.9
N.D.
+0.2
N.D.
stress
R2A with Cisplatin 0.001 mg/ml
+0.5
+1.0
N.D.
+0.0
N.D.
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