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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS27225 and RR42_RS27230 are separated by 459 nucleotides
RR42_RS27230 and RR42_RS27235 are separated by 4 nucleotides
RR42_RS27235 and RR42_RS27240 are separated by 107 nucleotides
RR42_RS27240 and RR42_RS27245 are separated by 274 nucleotides
RR42_RS27225: RR42_RS27225 - tricarballylate utilization protein B, at 1,459,851 to 1,461,023
_RS27225
RR42_RS27230: RR42_RS27230 - DNA-binding protein, at 1,461,483 to 1,461,890
_RS27230
RR42_RS27235: RR42_RS27235 - acetyl-CoA acetyltransferase, at 1,461,895 to 1,463,061
_RS27235
RR42_RS27240: RR42_RS27240 - 4-coumarate--CoA ligase, at 1,463,169 to 1,464,722
_RS27240
RR42_RS27245: RR42_RS27245 - hypothetical protein, at 1,464,997 to 1,465,482
_RS27245
Group
Condition
RR42
_RS27225
RR42
_RS27230
RR42
_RS27235
RR42
_RS27240
RR42
_RS27245
stress
R2A with Cobalt chloride 0.5 mM
-0.0
-3.4
+0.2
-0.1
-0.4
stress
R2A with D-Cycloserine 0.5 mg/ml
-0.3
-0.9
+0.1
-0.0
-0.9
stress
R2A with Vancomycin 0.5 mg/ml
+0.1
-1.4
-0.1
-0.2
-0.2
stress
R2A with nitrate 200 mM
-0.1
-1.3
-0.0
-0.2
-0.1
stress
R2A with Dimethyl Sulfoxide 5 vol%
-0.2
-1.0
-0.1
+0.1
-0.2
carbon source
D,L-Lactate (C)
+0.1
-1.0
-0.2
+0.0
-0.1
carbon source
pyruvate (C)
-0.3
-0.5
+0.2
-0.1
-0.4
stress
R2A with A22 0.01 mg/ml
+0.1
-1.0
+0.1
+0.0
-0.2
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
+0.2
-0.8
-0.1
+0.1
-0.3
carbon source
Octanoic (C)
-0.1
-0.9
-0.3
+0.0
+0.5
carbon source
L-Alanine (C)
+0.1
-0.3
+0.1
+0.1
-0.7
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.1
-1.1
-0.1
+0.1
+0.5
carbon source
adipate (C)
+0.1
-1.4
+0.1
+0.1
+0.5
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.2
+0.5
-0.1
+0.1
-0.7
carbon source
succinate (C)
+0.4
-0.5
-0.2
+0.1
-0.1
nitrogen source
L-Valine (N)
-0.1
+0.6
-0.3
+0.1
-0.3
stress
R2A with Nickel (II) chloride 0.5 mM
-0.1
-0.8
+0.2
+0.2
+0.5
carbon source
Heptanoic (C)
+0.2
-0.4
-0.1
-0.1
+0.6
carbon source
Disodium Glutarate (C)
+0.1
-0.7
+0.4
+0.1
+0.4
nitrogen source
L-Phenylalanine (N)
-0.0
-0.4
-0.0
+0.1
+0.8
carbon source
Protocatechuic Acid (C)
-0.3
+0.8
-0.2
+0.1
-0.1
lb
LB
-0.8
+0.2
-0.4
+0.1
+1.3
carbon source
adipate (C)
+0.6
-0.7
+0.1
+0.0
+0.5
carbon source
Valeric (C)
+0.4
-0.4
+0.0
+0.1
+0.5
carbon source
Dodecandioic (C)
+0.3
-0.3
+0.1
+0.2
+0.5
nitrogen source
L-Tryptophan (N)
+0.4
+0.3
-0.2
-0.1
+0.4
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.1
+0.6
+0.2
-0.3
+0.2
carbon source
Octanoic (C)
+0.3
+0.7
+0.2
+0.1
+0.4
carbon source
Valeric (C)
+0.3
+0.4
-0.1
+0.5
+0.5
carbon source
Azelaic (C)
+0.4
+0.3
+0.2
+0.3
+0.6
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RR42_RS27235
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