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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS27200 and RR42_RS27205 are separated by 110 nucleotides
RR42_RS27205 and RR42_RS27210 overlap by 4 nucleotides
RR42_RS27210 and RR42_RS27215 are separated by 93 nucleotides
RR42_RS27215 and RR42_RS27220 are separated by 184 nucleotides
RR42_RS27200: RR42_RS27200 - LacI family transcriptional regulator, at 1,454,667 to 1,455,638
_RS27200
RR42_RS27205: RR42_RS27205 - GlcNAc-PI de-N-acetylase, at 1,455,749 to 1,456,498
_RS27205
RR42_RS27210: RR42_RS27210 - hypothetical protein, at 1,456,495 to 1,457,208
_RS27210
RR42_RS27215: RR42_RS27215 - LysR family transcriptional regulator, at 1,457,302 to 1,458,252
_RS27215
RR42_RS27220: RR42_RS27220 - tricarballylate dehydrogenase, at 1,458,437 to 1,459,864
_RS27220
Group
Condition
RR42
_RS27200
RR42
_RS27205
RR42
_RS27210
RR42
_RS27215
RR42
_RS27220
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.2
-0.1
+0.6
-4.0
+0.1
r2a
R2A
+0.1
-0.4
-1.0
-0.9
-0.3
stress
R2A with nitrate 200 mM
+0.1
+0.1
-0.9
-1.1
-0.2
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.5
-0.0
-0.3
-0.8
-0.2
stress
R2A with Vancomycin 0.5 mg/ml
+0.6
+0.0
-1.0
-1.1
+0.0
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.5
-0.1
+0.6
-1.6
+0.1
carbon source
a-Ketoglutaric (C)
+0.0
+0.4
-0.3
-1.2
-0.3
stress
R2A with Nickel (II) chloride 0.35 mM
+0.1
+0.1
-1.4
-0.3
+0.0
stress
R2A with Cisplatin 0.001 mg/ml
+0.0
+0.1
-0.5
-0.9
+0.0
stress
R2A with Cobalt chloride 0.3 mM
+0.2
-0.3
+0.0
-1.3
+0.3
carbon source
D,L-Lactate (C)
+0.3
+0.3
-0.9
-0.7
-0.0
carbon source
4-Hydroxybenzoic Acid (C)
+0.4
+0.1
-0.5
-0.7
-0.2
stress
R2A with Paraquat dichloride 0.064 mg/ml
-0.4
+0.0
+0.5
-0.9
-0.0
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.2
+0.1
+0.3
-1.1
-0.0
carbon source
L-Malic (C)
+0.4
-0.1
-0.1
-0.9
-0.1
carbon source
propionate (C)
+0.3
+0.4
-0.6
-0.9
+0.1
carbon source
Pimelic (C)
-0.1
+0.1
+0.4
-0.9
-0.2
carbon source
Ethanol (C)
+0.3
+0.3
-0.7
-0.5
-0.1
stress
R2A with Doxycycline hyclate 0.0001 mg/ml
+0.3
+0.3
-0.2
-1.1
+0.1
carbon source
Trisodium citrate (C)
+0.4
+0.3
-0.5
-0.5
-0.1
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
-0.1
+0.2
+0.6
-0.8
-0.3
stress
R2A with nitrate 200 mM
+0.4
-0.1
+0.2
-1.0
-0.0
nitrogen source
L-Glutamine (N)
+0.1
-0.1
+0.6
-0.7
-0.3
stress
R2A with A22 0.01 mg/ml
+0.4
+0.3
+0.1
-0.8
-0.2
carbon source
L-Histidine (C)
+0.6
+0.2
-0.7
-0.3
+0.0
lb
LB
-0.2
-0.1
-0.7
+1.0
-0.0
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.5
-0.1
+0.5
+0.5
-0.1
carbon source
Azelaic (C)
+0.2
-0.1
+0.7
-0.6
+0.1
nitrogen source
L-Leucine (N)
+0.4
-0.1
+0.2
+0.5
-0.5
nitrogen source
L-Tryptophan (N)
+0.2
+0.1
+0.5
+0.7
+0.2
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