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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS27050 and RR42_RS27055 are separated by 10 nucleotides
RR42_RS27055 and RR42_RS27060 overlap by 8 nucleotides
RR42_RS27060 and RR42_RS27065 are separated by 393 nucleotides
RR42_RS27065 and RR42_RS27070 are separated by 27 nucleotides
RR42_RS27050: RR42_RS27050 - transporter, at 1,419,587 to 1,420,960
_RS27050
RR42_RS27055: RR42_RS27055 - membrane protein, at 1,420,971 to 1,424,111
_RS27055
RR42_RS27060: RR42_RS27060 - cation transporter, at 1,424,104 to 1,425,243
_RS27060
RR42_RS27065: RR42_RS27065 - hypothetical protein, at 1,425,637 to 1,425,993
_RS27065
RR42_RS27070: RR42_RS27070 - membrane protein, at 1,426,021 to 1,426,725
_RS27070
Group
Condition
RR42
_RS27050
RR42
_RS27055
RR42
_RS27060
RR42
_RS27065
RR42
_RS27070
lb
LB
-1.0
-3.5
-1.2
-1.0
+0.6
stress
R2A with Cobalt chloride 0.5 mM
+0.5
+0.1
-4.1
-0.2
-1.3
stress
R2A with D-Cycloserine 0.5 mg/ml
+0.5
-0.2
-0.7
-2.6
-0.6
carbon source
Trisodium citrate (C)
+0.4
-1.0
-2.2
-0.6
-0.1
stress
R2A with Lomefloxacin 0.001 mM
-0.2
+0.1
-1.3
-0.4
-1.5
carbon source
adipate (C)
-0.5
+0.2
-2.1
-0.4
-0.5
carbon source
Suberic (C)
+0.0
-0.1
-2.4
-0.1
-0.0
stress
R2A with Cisplatin 0.001 mg/ml
+0.5
-0.0
-0.5
-1.4
-0.9
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.0
-0.2
-1.7
-0.4
+0.1
carbon source
propionate (C)
-0.2
-0.2
-1.2
+0.2
-0.6
carbon source
Protocatechuic Acid (C)
-1.2
-0.2
+0.1
+0.4
-0.9
carbon source
D,L-Lactate (C)
-0.5
+0.2
-1.8
+0.8
-0.5
nitrogen source
L-Glutamine (N)
-0.9
+0.2
-0.1
-1.2
+0.3
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.2
-0.6
+0.4
-0.5
-0.9
stress
R2A with Nickel (II) chloride 0.35 mM
+0.1
+0.2
-0.2
-2.1
+0.3
stress
R2A with Vancomycin 0.5 mg/ml
+0.2
+0.1
-0.3
-2.0
+0.4
stress
R2A with Doxycycline hyclate 0.0001 mg/ml
+0.3
-0.0
-0.7
-0.6
-0.5
carbon source
a-Ketoglutaric (C)
+0.9
+0.2
-1.6
-0.8
-0.1
carbon source
Protocatechuic Acid (C)
-0.5
-0.0
-0.6
+0.4
-0.5
carbon source
L-Tryptophan (C)
+0.4
-0.5
-0.1
-1.0
+0.1
stress
R2A with Paraquat dichloride 0.064 mg/ml
+0.7
+0.0
-0.5
-0.3
-0.8
carbon source
Disodium Glutarate (C)
-0.3
+0.1
-1.0
+1.1
-0.4
carbon source
Azelaic (C)
-0.2
-0.1
-1.0
+0.8
+0.1
stress
R2A with copper (II) chloride 0.25 mM
+0.1
+0.1
-1.6
+0.2
+0.8
nitrogen source
L-Valine (N)
+0.1
-0.3
-0.8
+0.5
+0.3
nitrogen source
L-Tryptophan (N)
-0.5
+0.3
+0.6
-0.5
+0.3
carbon source
Valeric (C)
-1.1
-0.1
+0.6
+1.1
-0.1
oxygen_nitrate
exometabolites; 5% oxygen; 5 mM nitrate
-0.1
+0.2
+1.2
-0.6
-0.2
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
+0.2
-0.0
+1.4
-0.7
+0.3
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.2
-0.1
+0.2
+0.4
+1.1
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