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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS26905 and RR42_RS26910 are separated by 68 nucleotides
RR42_RS26910 and RR42_RS26915 are separated by 78 nucleotides
RR42_RS26915 and RR42_RS26920 are separated by 313 nucleotides
RR42_RS26920 and RR42_RS26925 are separated by 293 nucleotides
RR42_RS26905: RR42_RS26905 - methylcrotonoyl-CoA carboxylase, at 1,390,729 to 1,392,336
_RS26905
RR42_RS26910: RR42_RS26910 - isovaleryl-CoA dehydrogenase, at 1,392,405 to 1,393,586
_RS26910
RR42_RS26915: RR42_RS26915 - AMP-binding protein, at 1,393,665 to 1,395,386
_RS26915
RR42_RS26920: RR42_RS26920 - TetR family transcriptional regulator, at 1,395,700 to 1,396,401
_RS26920
RR42_RS26925: RR42_RS26925 - membrane protein, at 1,396,695 to 1,396,847
_RS26925
Group
Condition
RR42
_RS26905
RR42
_RS26910
RR42
_RS26915
RR42
_RS26920
RR42
_RS26925
carbon source
L-Leucine (C)
-4.9
N.D.
-2.6
-0.0
-0.2
carbon source
L-Leucine (C)
-4.7
N.D.
-2.7
+0.2
-0.4
nitrogen source
L-Leucine (N)
-4.3
N.D.
-2.8
+0.2
-0.1
nitrogen source
L-Leucine (N)
-4.4
N.D.
-2.1
+0.2
-0.7
nitrogen source
L-Valine (N)
-4.0
N.D.
-1.7
-0.0
-1.1
nitrogen source
L-Valine (N)
-4.1
N.D.
-1.6
-0.4
+0.0
carbon source
L-Tryptophan (C)
-2.5
N.D.
-0.5
-0.9
-0.6
carbon source
L-Proline (C)
-1.9
N.D.
-0.2
-1.4
-0.9
carbon source
L-Alanine (C)
-2.1
N.D.
+0.0
-0.3
-0.9
carbon source
L-Tryptophan (C)
-2.2
N.D.
-0.6
-0.5
+0.0
carbon source
Ethanol (C)
-2.0
N.D.
-0.1
-0.7
-0.3
nitrogen source
L-Isoleucine (N)
-1.7
N.D.
-0.2
-0.3
-0.6
carbon source
L-Phenylalanine (C)
-2.2
N.D.
-0.1
-0.2
-0.3
carbon source
4-Hydroxybenzoic Acid (C)
-1.9
N.D.
-0.3
-0.4
-0.3
carbon source
L-Alanine (C)
-2.1
N.D.
-0.1
-0.5
+0.1
carbon source
4-Hydroxybenzoic Acid (C)
-1.7
N.D.
-0.2
-0.5
-0.2
carbon source
Pimelic (C)
-1.5
N.D.
-0.1
-1.3
+0.7
carbon source
Ethanol (C)
-2.1
N.D.
-0.2
-0.1
+0.4
carbon source
Pimelic (C)
-1.9
N.D.
+0.1
-0.6
+0.7
nitrogen source
L-Isoleucine (N)
-1.7
N.D.
-0.2
+0.1
+0.7
carbon source
Disodium Glutarate (C)
-2.3
N.D.
-0.0
-0.0
+1.6
carbon source
Protocatechuic Acid (C)
-0.6
N.D.
+0.7
-1.2
+0.5
carbon source
Octanoic (C)
-0.0
N.D.
+0.5
-1.3
+0.9
carbon source
succinate (C)
-1.2
N.D.
+0.0
+0.7
+0.7
carbon source
Valeric (C)
-1.0
N.D.
+0.2
-0.3
+1.5
carbon source
propionate (C)
-0.7
N.D.
+0.2
+0.2
+1.7
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+1.8
N.D.
+0.9
-1.0
+0.3
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+1.7
N.D.
+1.2
-1.2
+0.3
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+1.8
N.D.
+1.2
-1.2
+0.3
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+1.6
N.D.
+1.1
-0.5
-0.2
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