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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS26550 and RR42_RS26555 are separated by 235 nucleotides
RR42_RS26555 and RR42_RS26560 are separated by 269 nucleotides
RR42_RS26560 and RR42_RS26565 are separated by 166 nucleotides
RR42_RS26565 and RR42_RS26570 are separated by 148 nucleotides
RR42_RS26550: RR42_RS26550 - gluconolactonase, at 1,312,159 to 1,313,103
_RS26550
RR42_RS26555: RR42_RS26555 - tRNA-Met, at 1,313,339 to 1,313,414
_RS26555
RR42_RS26560: RR42_RS26560 - hypothetical protein, at 1,313,684 to 1,313,923
_RS26560
RR42_RS26565: RR42_RS26565 - 5'-3' exonuclease, at 1,314,090 to 1,314,896
_RS26565
RR42_RS26570: RR42_RS26570 - serine hydrolase, at 1,315,045 to 1,316,220
_RS26570
Group
Condition
RR42
_RS26550
RR42
_RS26555
RR42
_RS26560
RR42
_RS26565
RR42
_RS26570
carbon source
Protocatechuic Acid (C)
+0.1
-2.9
-0.3
+0.1
+0.2
stress
R2A with Cisplatin 0.001 mg/ml
-0.1
-2.6
-0.4
+0.5
+0.1
lb
LB
-0.2
-1.7
+0.3
-0.5
-0.4
carbon source
Protocatechuic Acid (C)
-0.1
-1.9
+0.3
-0.0
-0.3
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+0.0
-0.5
-0.8
-0.5
-0.3
stress
R2A with Nickel (II) chloride 0.5 mM
-0.2
-0.0
-0.6
-0.4
-0.6
stress
R2A with Cobalt chloride 0.3 mM
-0.1
-1.2
+0.0
+0.3
-0.6
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
+0.1
-1.1
-0.3
-0.1
+0.1
stress
R2A with Chlorite 4 mM
-0.0
-0.6
-0.9
-0.3
+0.3
carbon source
Heptanoic (C)
-0.2
-0.5
-0.5
-0.4
+0.1
stress
R2A with Cobalt chloride 0.5 mM
+0.1
-1.1
-0.6
+0.1
+0.0
carbon source
Disodium Glutarate (C)
-0.1
-0.9
-0.3
+0.1
+0.0
carbon source
Valeric (C)
+0.1
-0.0
-1.2
+0.3
-0.4
stress
R2A with Doxycycline hyclate 0.0001 mg/ml
+0.1
-0.6
+0.2
-0.3
-0.3
carbon source
D,L-Lactate (C)
+0.1
-1.2
+0.1
-0.1
+0.1
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
-0.1
-1.3
+0.1
+0.2
+0.3
carbon source
L-Alanine (C)
+0.0
-1.4
+0.3
-0.0
+0.2
nitrogen source
D-Alanine (N)
+0.1
-1.0
-0.2
+0.2
+0.3
carbon source
adipate (C)
-0.1
+0.4
-0.5
+0.1
-0.5
oxygen_nitrate
exometabolites; 5% oxygen; 5 mM nitrate
-0.0
-0.8
+0.3
-0.0
+0.5
carbon source
succinate (C)
-0.2
+0.7
-0.2
+0.0
-0.4
stress
R2A with Nickel (II) chloride 0.35 mM
+0.2
-0.7
+0.9
-0.1
-0.4
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.0
+0.7
-0.2
+0.2
-0.4
nitrogen source
L-Glutamine (N)
-0.3
+0.8
-0.3
+0.4
-0.2
r2a
R2A
+0.4
-0.4
+0.3
+0.2
-0.2
stress
R2A with A22 0.01 mg/ml
+0.2
+0.8
+0.2
-0.5
-0.2
carbon source
D,L-Lactate (C)
+0.1
-0.4
+0.6
+0.1
+0.4
carbon source
L-Proline (C)
-0.0
+0.5
-0.3
+0.2
+0.6
nitrogen source
casaminos (N)
-0.0
+0.7
+0.2
+0.3
+0.2
nitrogen source
L-Serine (N)
+0.2
+0.9
+0.2
+0.5
+0.0
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