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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS26535 and RR42_RS26540 overlap by 4 nucleotides
RR42_RS26540 and RR42_RS26545 are separated by 89 nucleotides
RR42_RS26545 and RR42_RS26550 are separated by 3 nucleotides
RR42_RS26550 and RR42_RS26555 are separated by 235 nucleotides
RR42_RS26535: RR42_RS26535 - diguanylate cyclase, at 1,309,467 to 1,310,150
_RS26535
RR42_RS26540: RR42_RS26540 - 3-phosphoglycerate dehydrogenase, at 1,310,147 to 1,311,082
_RS26540
RR42_RS26545: RR42_RS26545 - ABC transporter substrate-binding protein, at 1,311,172 to 1,312,155
_RS26545
RR42_RS26550: RR42_RS26550 - gluconolactonase, at 1,312,159 to 1,313,103
_RS26550
RR42_RS26555: RR42_RS26555 - tRNA-Met, at 1,313,339 to 1,313,414
_RS26555
Group
Condition
RR42
_RS26535
RR42
_RS26540
RR42
_RS26545
RR42
_RS26550
RR42
_RS26555
lb
LB
+0.5
-5.0
+0.0
-0.2
-1.7
stress
R2A with Cobalt chloride 0.5 mM
-1.6
-0.8
+0.1
+0.1
-1.1
carbon source
Protocatechuic Acid (C)
-1.1
+0.7
+0.0
+0.1
-2.9
oxygen_nitrate
exometabolites; 5% oxygen; 5 mM nitrate
+0.2
-2.3
-0.0
-0.0
-0.8
stress
R2A with Nickel (II) chloride 0.35 mM
-1.2
-1.2
+0.3
+0.2
-0.7
stress
R2A with Cisplatin 0.001 mg/ml
-0.4
+0.4
+0.4
-0.1
-2.6
carbon source
a-Ketoglutaric (C)
-0.8
-1.4
-0.0
+0.2
-0.3
carbon source
Protocatechuic Acid (C)
-0.2
+0.2
-0.2
-0.1
-1.9
stress
R2A with Sisomicin 0.035 mg/ml
-0.3
-1.2
+0.0
+0.2
-0.7
carbon source
4-Hydroxybenzoic Acid (C)
+0.1
-0.9
+0.2
-0.0
-1.3
stress
R2A with Lomefloxacin 0.001 mM
+0.5
-2.9
-0.2
+0.2
+0.6
carbon source
succinate (C)
+0.1
-1.7
-0.2
-0.1
+0.1
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
+0.0
-0.5
+0.3
-0.1
-1.3
carbon source
Disodium Glutarate (C)
-0.4
+0.5
-0.2
-0.1
-0.9
stress
R2A with Paraquat dichloride 0.064 mg/ml
-1.6
+1.1
+0.3
-0.1
-0.3
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
+0.9
+0.3
-0.1
+0.1
-1.1
carbon source
D,L-Lactate (C)
-0.3
+1.2
+0.2
+0.1
-1.2
carbon source
Heptanoic (C)
-0.8
+1.4
+0.2
-0.2
-0.5
carbon source
succinate (C)
-0.5
+1.3
+0.1
-0.2
-0.4
carbon source
propionate (C)
-0.7
+1.3
-0.1
+0.1
+0.2
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+1.7
-0.8
-0.1
+0.1
-0.0
carbon source
Dodecandioic (C)
-1.0
+0.9
-0.0
+0.3
+0.9
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+1.4
-0.3
-0.3
+0.0
+0.7
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+1.2
+0.9
+0.0
+0.0
-0.5
carbon source
Disodium Glutarate (C)
-0.4
+1.6
+0.0
+0.0
+0.4
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+1.3
+0.5
-0.2
+0.2
-0.1
carbon source
adipate (C)
-0.1
+1.7
-0.2
-0.1
+0.4
stress
R2A with A22 0.01 mg/ml
-0.4
+1.2
+0.1
+0.2
+0.8
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.9
+1.2
+0.2
-0.0
-0.3
nitrogen source
L-Serine (N)
+0.9
+0.4
+0.2
+0.2
+0.9
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