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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS26480 and RR42_RS26485 are separated by 39 nucleotides
RR42_RS26485 and RR42_RS26490 overlap by 16 nucleotides
RR42_RS26490 and RR42_RS26495 are separated by 251 nucleotides
RR42_RS26495 and RR42_RS26500 are separated by 6 nucleotides
RR42_RS26480: RR42_RS26480 - alpha/beta hydrolase, at 1,296,606 to 1,297,451
_RS26480
RR42_RS26485: RR42_RS26485 - 2,5-dihydroxypyridine 5,6-dioxygenase, at 1,297,491 to 1,298,537
_RS26485
RR42_RS26490: RR42_RS26490 - N-carbamoylsarcosine amidase, at 1,298,522 to 1,299,163
_RS26490
RR42_RS26495: RR42_RS26495 - carbon monoxide dehydrogenase, at 1,299,415 to 1,301,823
_RS26495
RR42_RS26500: RR42_RS26500 - carbon monoxide dehydrogenase, at 1,301,830 to 1,302,657
_RS26500
Group
Condition
RR42
_RS26480
RR42
_RS26485
RR42
_RS26490
RR42
_RS26495
RR42
_RS26500
stress
R2A with Cobalt chloride 0.5 mM
-1.1
-1.7
N.D.
-0.4
+0.1
lb
LB
-1.7
+0.0
N.D.
+0.0
-0.4
carbon source
L-Glutamine (C)
-0.4
-0.8
N.D.
-0.1
-0.1
stress
R2A with Sisomicin 0.035 mg/ml
-0.5
-0.9
N.D.
-0.1
+0.0
carbon source
4-Hydroxybenzoic Acid (C)
-0.4
-0.7
N.D.
-0.0
+0.3
carbon source
propionate (C)
-0.6
-0.2
N.D.
-0.1
+0.1
carbon source
L-Lactate (C)
-0.2
-0.8
N.D.
+0.0
+0.2
stress
R2A with Thallium(I) acetate 0.001 mg/ml
-0.8
+0.1
N.D.
-0.2
+0.1
carbon source
succinate (C)
-0.5
-0.2
N.D.
-0.2
+0.3
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.6
+0.3
N.D.
+0.1
-0.4
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.9
+0.5
N.D.
-0.2
+0.1
stress
R2A with Cisplatin 0.001 mg/ml
-0.5
-0.5
N.D.
+0.2
+0.3
stress
R2A with Vancomycin 0.5 mg/ml
-0.0
-0.4
N.D.
-0.3
+0.5
stress
R2A with D-Cycloserine 0.5 mg/ml
+0.3
-0.6
N.D.
-0.2
+0.4
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.6
+0.1
N.D.
-0.0
-0.6
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
-0.4
+0.6
N.D.
+0.1
-0.3
stress
R2A with D-Cycloserine 0.01 mg/ml
-0.2
+0.5
N.D.
+0.1
-0.3
carbon source
propionate (C)
-0.3
+0.4
N.D.
-0.2
+0.3
nitrogen source
L-Glutamine (N)
+0.2
-0.6
N.D.
+0.3
+0.2
stress
R2A with Lomefloxacin 0.001 mM
-0.5
+0.5
N.D.
-0.0
+0.2
carbon source
Octanoic (C)
+0.5
-0.3
N.D.
-0.2
+0.4
carbon source
L-Histidine (C)
-0.4
+0.7
N.D.
-0.2
+0.2
carbon source
pyruvate (C)
-0.3
+0.7
N.D.
-0.1
+0.1
nitrogen source
casaminos (N)
-0.3
+0.7
N.D.
-0.0
-0.1
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+0.7
+0.4
N.D.
-0.1
-0.4
nitrogen source
L-Citrulline (N)
+0.4
+0.5
N.D.
+0.2
-0.1
carbon source
L-Asparagine (C)
+0.2
+0.6
N.D.
-0.1
+0.2
carbon source
L-Proline (C)
-0.0
+0.8
N.D.
+0.0
+0.2
carbon source
L-Tryptophan (C)
+0.1
+0.8
N.D.
-0.0
+0.2
carbon source
Heptanoic (C)
+0.8
+0.0
N.D.
+0.0
+0.3
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