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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS26370 and RR42_RS26375 are separated by 68 nucleotides
RR42_RS26375 and RR42_RS26380 are separated by 460 nucleotides
RR42_RS26380 and RR42_RS26385 are separated by 21 nucleotides
RR42_RS26385 and RR42_RS26390 are separated by 34 nucleotides
RR42_RS26370: RR42_RS26370 - tautomerase, at 1,273,368 to 1,273,760
_RS26370
RR42_RS26375: RR42_RS26375 - hypothetical protein, at 1,273,829 to 1,274,275
_RS26375
RR42_RS26380: RR42_RS26380 - MFS transporter, at 1,274,736 to 1,276,031
_RS26380
RR42_RS26385: RR42_RS26385 - hypothetical protein, at 1,276,053 to 1,277,435
_RS26385
RR42_RS26390: RR42_RS26390 - MacB family efflux pump subunit, at 1,277,470 to 1,279,470
_RS26390
Group
Condition
RR42
_RS26370
RR42
_RS26375
RR42
_RS26380
RR42
_RS26385
RR42
_RS26390
stress
R2A with Polymyxin B sulfate 0.005 mg/ml
+0.4
+0.2
-0.3
-3.2
-4.3
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
-0.6
-0.4
-0.6
-0.3
-0.2
stress
R2A with Cisplatin 0.001 mg/ml
-0.8
-0.5
-0.3
-0.1
-0.3
carbon source
Carbon source Phenylacetic 2.5 mM
-1.5
+0.0
-0.3
+0.0
-0.0
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.5
+0.1
-0.5
-0.7
+0.1
carbon source
Protocatechuic Acid (C)
-0.7
-0.6
-0.1
-0.1
+0.1
nitrogen source
L-Valine (N)
-0.6
-0.3
+0.3
-0.4
-0.2
nitrogen source
L-Threonine (N)
-1.0
-0.2
-0.2
+0.2
-0.1
stress
R2A with Chloride 300 mM
+0.1
-0.6
-0.3
-0.4
+0.1
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-1.0
-0.3
-0.0
+0.1
+0.2
stress
R2A with Cisplatin 0.001 mg/ml
-0.7
-0.3
-0.1
+0.1
+0.1
carbon source
L-Leucine (C)
-0.9
-0.1
+0.2
+0.3
-0.0
carbon source
L-Asparagine (C)
-0.5
-0.4
-0.1
+0.2
+0.2
lb
LB
+0.3
-0.5
-0.2
-0.3
+0.3
carbon source
Valeric (C)
-1.0
+0.3
+0.1
-0.1
+0.3
carbon source
adipate (C)
-0.6
+0.1
+0.2
-0.3
+0.4
carbon source
L-Lactate (C)
-0.9
+0.0
+0.3
+0.5
-0.0
carbon source
Octanoic (C)
-0.8
+0.2
+0.3
+0.1
+0.1
stress
R2A with Nickel (II) chloride 0.35 mM
+1.2
-0.2
-0.5
-0.0
-0.5
carbon source
pyruvate (C)
-0.7
+0.4
+0.2
+0.4
-0.2
carbon source
D-Lactate (C)
+0.6
-0.6
-0.3
+0.4
+0.1
carbon source
Azelaic (C)
-0.2
+0.4
+0.2
-0.5
+0.3
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
+0.9
-0.4
-0.2
+0.0
+0.0
stress
R2A with D-Cycloserine 0.5 mg/ml
+0.6
-0.4
-0.0
+0.6
+0.1
stress
R2A with Lomefloxacin 0.001 mM
+1.0
-0.1
+0.2
+0.3
-0.3
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.7
+0.2
+0.1
+0.0
+0.3
carbon source
Dodecandioic (C)
+0.4
+0.4
+0.3
+0.2
+0.2
carbon source
L-Tryptophan (C)
+0.3
+0.1
+0.2
+0.6
+0.3
carbon source
Hexanoic (C)
+0.5
+0.3
+0.3
+0.5
+0.1
carbon source
Protocatechuic Acid (C)
+0.7
+0.4
+0.6
+0.3
+0.2
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