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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS26295 and RR42_RS26300 are separated by 119 nucleotides
RR42_RS26300 and RR42_RS26305 are separated by 597 nucleotides
RR42_RS26305 and RR42_RS26310 are separated by 105 nucleotides
RR42_RS26310 and RR42_RS26315 are separated by 11 nucleotides
RR42_RS26295: RR42_RS26295 - GntR family transcriptional regulator, at 1,259,119 to 1,259,847
_RS26295
RR42_RS26300: RR42_RS26300 - chemotaxis protein, at 1,259,967 to 1,261,163
_RS26300
RR42_RS26305: RR42_RS26305 - iron permease, at 1,261,761 to 1,262,081
_RS26305
RR42_RS26310: RR42_RS26310 - microcystin LR degradation protein MlrC, at 1,262,187 to 1,263,644
_RS26310
RR42_RS26315: RR42_RS26315 - MFS transporter, at 1,263,656 to 1,264,642
_RS26315
Group
Condition
RR42
_RS26295
RR42
_RS26300
RR42
_RS26305
RR42
_RS26310
RR42
_RS26315
stress
R2A with Lomefloxacin 0.001 mM
-0.2
-0.5
-0.2
-0.1
-0.4
lb
LB
-0.3
-0.2
-0.0
-0.1
-0.6
carbon source
L-Histidine (C)
-0.1
-0.5
-0.5
-0.2
+0.1
carbon source
L-Asparagine (C)
-0.2
-0.6
+0.1
-0.2
-0.1
stress
R2A with D-Cycloserine 0.5 mg/ml
-0.4
+0.2
+0.1
-0.3
-0.5
carbon source
adipate (C)
-0.7
+0.4
-0.4
+0.1
-0.0
carbon source
Pimelic (C)
-0.5
+0.2
-0.4
+0.3
-0.0
nitrogen source
L-Glutamine (N)
-0.4
-0.5
+0.4
-0.2
+0.2
carbon source
L-Proline (C)
+0.4
-0.6
-0.2
+0.0
+0.1
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
+0.4
-0.0
-0.3
-0.2
-0.2
carbon source
Pimelic (C)
-0.5
+0.4
-0.2
+0.1
-0.1
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.5
-0.1
-0.5
+0.0
-0.1
carbon source
adipate (C)
-0.9
+0.3
-0.0
+0.3
+0.2
nitrogen source
L-Serine (N)
+0.1
-0.6
+0.4
+0.0
+0.1
carbon source
Carbon source Phenylacetic 2.5 mM
-0.3
+0.2
+0.2
+0.1
-0.2
stress
R2A with Nickel (II) chloride 0.35 mM
+0.1
+0.5
-0.3
-0.2
+0.1
nitrogen source
casaminos (N)
+0.2
-0.4
+0.5
-0.1
+0.1
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+0.6
+0.3
-0.2
-0.2
-0.0
carbon source
Azelaic (C)
+0.1
+0.2
-0.3
+0.5
+0.1
stress
R2A with Cobalt chloride 0.5 mM
-0.1
+0.8
+0.2
-0.1
-0.2
carbon source
Disodium Glutarate (C)
+0.4
+0.5
-0.1
+0.1
-0.2
carbon source
D-Lactate (C)
+0.7
-0.3
+0.1
+0.0
+0.3
carbon source
Dodecandioic (C)
+0.1
+0.4
-0.1
+0.4
+0.1
carbon source
Hexanoic (C)
+0.2
+0.4
+0.1
+0.4
-0.2
carbon source
D-Lactate (C)
+1.0
+0.4
-0.1
-0.2
-0.1
carbon source
Dodecandioic (C)
+0.1
+0.7
-0.2
+0.4
+0.2
carbon source
Octanoic (C)
+0.2
+0.4
+0.3
+0.5
+0.1
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+0.6
+0.6
+0.2
-0.2
+0.3
carbon source
Protocatechuic Acid (C)
+1.5
+0.6
-0.0
+0.1
-0.1
carbon source
Protocatechuic Acid (C)
+1.2
+1.0
+0.4
+0.3
-0.2
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