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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS26285 and RR42_RS26290 are separated by 276 nucleotides
RR42_RS26290 and RR42_RS26295 are separated by 133 nucleotides
RR42_RS26295 and RR42_RS26300 are separated by 119 nucleotides
RR42_RS26300 and RR42_RS26305 are separated by 597 nucleotides
RR42_RS26285: RR42_RS26285 - ureidoglycolate hydrolase, at 1,256,871 to 1,257,389
_RS26285
RR42_RS26290: RR42_RS26290 - MFS transporter permease, at 1,257,666 to 1,258,985
_RS26290
RR42_RS26295: RR42_RS26295 - GntR family transcriptional regulator, at 1,259,119 to 1,259,847
_RS26295
RR42_RS26300: RR42_RS26300 - chemotaxis protein, at 1,259,967 to 1,261,163
_RS26300
RR42_RS26305: RR42_RS26305 - iron permease, at 1,261,761 to 1,262,081
_RS26305
Group
Condition
RR42
_RS26285
RR42
_RS26290
RR42
_RS26295
RR42
_RS26300
RR42
_RS26305
nitrogen source
L-Lysine (N)
-0.5
+0.1
-0.3
-0.2
-0.4
carbon source
L-Histidine (C)
-0.3
+0.2
-0.1
-0.5
-0.5
temperature
R2A 23C
-0.4
-0.1
+0.1
-0.4
-0.3
nitrogen source
L-Glutamine (N)
-0.3
-0.2
-0.4
-0.5
+0.4
carbon source
Pimelic (C)
+0.0
-0.2
-0.5
+0.2
-0.4
carbon source
Pimelic (C)
-0.1
-0.2
-0.5
+0.4
-0.2
stress
R2A with Lomefloxacin 0.001 mM
+0.6
-0.3
-0.2
-0.5
-0.2
carbon source
L-Alanine (C)
-0.5
+0.3
-0.2
-0.3
+0.2
stress
R2A with Nickel (II) chloride 0.35 mM
-1.1
+0.3
+0.1
+0.5
-0.3
nitrogen source
L-Serine (N)
-0.3
+0.1
+0.1
-0.6
+0.4
carbon source
adipate (C)
+0.5
-0.2
-0.7
+0.4
-0.4
stress
R2A with sodium fluoride 100 mM
-0.6
-0.0
-0.2
+0.5
-0.1
nitrogen source
L-Isoleucine (N)
-0.6
+0.0
+0.5
-0.1
-0.1
carbon source
adipate (C)
+0.4
-0.1
-0.9
+0.3
-0.0
carbon source
L-Lactate (C)
-0.8
+0.2
-0.1
+0.3
+0.2
stress
R2A with Cisplatin 0.001 mg/ml
-0.6
-0.1
+0.3
+0.3
-0.1
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.2
+0.1
+0.5
-0.1
-0.5
stress
R2A with Doxycycline hyclate 0.0001 mg/ml
-0.4
+0.1
-0.2
+0.2
+0.5
carbon source
Hexanoic (C)
-0.4
-0.1
+0.2
+0.4
+0.1
carbon source
L-Threonine (C)
-0.5
+0.4
-0.0
+0.4
+0.3
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.1
+0.0
+0.6
+0.3
-0.2
stress
R2A with Cobalt chloride 0.5 mM
-0.1
-0.2
-0.1
+0.8
+0.2
nitrogen source
casaminos (N)
+0.1
+0.3
+0.2
-0.4
+0.5
carbon source
Trisodium citrate (C)
-0.2
+0.1
+0.1
+0.8
-0.0
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.2
-0.1
+0.6
+0.6
+0.2
carbon source
D-Lactate (C)
-0.3
+0.1
+1.0
+0.4
-0.1
nitrogen source
L-Leucine (N)
+0.3
+0.3
+0.0
+0.2
+0.4
stress
R2A with Chloride 300 mM
+0.5
+0.3
+0.2
+0.4
+0.1
carbon source
Protocatechuic Acid (C)
-0.1
+0.1
+1.5
+0.6
-0.0
carbon source
Protocatechuic Acid (C)
+0.0
-0.1
+1.2
+1.0
+0.4
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