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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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5
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS26250 and RR42_RS26255 are separated by 36 nucleotides
RR42_RS26255 and RR42_RS26260 are separated by 101 nucleotides
RR42_RS26260 and RR42_RS26265 are separated by 485 nucleotides
RR42_RS26265 and RR42_RS26270 are separated by 727 nucleotides
RR42_RS26250: RR42_RS26250 - allantoate amidohydrolase, at 1,247,688 to 1,248,935
_RS26250
RR42_RS26255: RR42_RS26255 - aldehyde dehydrogenase, at 1,248,972 to 1,250,471
_RS26255
RR42_RS26260: RR42_RS26260 - hypothetical protein, at 1,250,573 to 1,251,274
_RS26260
RR42_RS26265: RR42_RS26265 - hypothetical protein, at 1,251,760 to 1,251,990
_RS26265
RR42_RS26270: RR42_RS26270 - hydroperoxidase, at 1,252,718 to 1,254,955
_RS26270
Group
Condition
RR42
_RS26250
RR42
_RS26255
RR42
_RS26260
RR42
_RS26265
RR42
_RS26270
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.2
+0.0
-0.0
-2.3
+0.1
stress
R2A with Lomefloxacin 0.001 mM
-0.2
+0.1
-0.3
-1.8
-0.2
stress
R2A with D-Cycloserine 0.01 mg/ml
-0.5
-0.1
-0.2
-1.6
+0.1
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.5
-0.1
+0.0
-1.5
-0.1
carbon source
propionate (C)
-0.1
+0.0
-0.2
-1.5
+0.1
carbon source
L-Alanine (C)
+0.0
+0.0
-0.1
-1.4
+0.0
nitrogen source
L-Lysine (N)
-0.3
-0.0
-0.0
-1.2
+0.1
r2a
R2A
+0.1
+0.1
-0.2
-1.2
+0.1
carbon source
adipate (C)
+0.3
+0.3
+0.3
-2.0
+0.1
oxygen_nitrate
exometabolites; 5% oxygen; 5 mM nitrate
-0.3
+0.1
+0.3
-1.2
+0.1
stress
R2A with Nickel (II) chloride 0.35 mM
+0.1
+0.0
+0.2
-1.3
+0.1
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
-0.2
-0.3
+0.2
-0.8
+0.3
stress
R2A with Cobalt chloride 0.3 mM
+0.2
+0.1
+0.2
-1.0
+0.1
carbon source
4-Hydroxybenzoic Acid (C)
-0.3
+0.1
-0.2
+0.7
-0.2
carbon source
butyrate (C)
-0.2
-0.1
-0.4
+0.8
+0.0
stress
R2A with Chlorite 4 mM
-0.3
-0.2
-0.2
+0.8
+0.0
stress
R2A with Cisplatin 0.001 mg/ml
+0.4
-0.2
-0.4
+0.5
-0.1
stress
R2A with Cobalt chloride 0.5 mM
+0.5
+0.2
+0.1
-0.5
+0.1
lb
LB
+0.3
-0.1
-0.2
+0.6
-0.2
carbon source
Disodium Glutarate (C)
-0.2
+0.1
+0.1
+0.8
-0.1
carbon source
D,L-Lactate (C)
-0.2
-0.1
+0.0
+1.2
+0.0
nitrogen source
L-Phenylalanine (N)
-0.1
-0.2
+0.0
+0.9
+0.2
stress
R2A with Doxycycline hyclate 0.0001 mg/ml
+0.1
-0.3
-0.1
+1.2
+0.1
nitrogen source
L-Isoleucine (N)
+0.1
-0.0
-0.2
+0.9
+0.2
nitrogen source
L-Valine (N)
+0.1
+0.2
-0.2
+1.0
-0.0
carbon source
Protocatechuic Acid (C)
+0.0
+0.2
+0.2
+1.1
-0.3
carbon source
Valeric (C)
+0.3
+0.2
-0.1
+0.8
+0.0
carbon source
Valeric (C)
-0.3
+0.0
-0.0
+1.6
+0.0
carbon source
Hexanoic (C)
+0.0
+0.2
+0.1
+1.1
+0.0
nitrogen source
L-Glutamine (N)
-0.0
-0.1
+0.4
+1.5
+0.1
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