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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS26235 and RR42_RS26240 are separated by 500 nucleotides
RR42_RS26240 and RR42_RS26245 are separated by 106 nucleotides
RR42_RS26245 and RR42_RS26250 are separated by 26 nucleotides
RR42_RS26250 and RR42_RS26255 are separated by 36 nucleotides
RR42_RS26235: RR42_RS26235 - GntR family transcriptional regulator, at 1,243,315 to 1,244,064
_RS26235
RR42_RS26240: RR42_RS26240 - 4-aminobutyrate aminotransferase, at 1,244,565 to 1,245,827
_RS26240
RR42_RS26245: RR42_RS26245 - thiamine pyrophosphate-binding protein, at 1,245,934 to 1,247,661
_RS26245
RR42_RS26250: RR42_RS26250 - allantoate amidohydrolase, at 1,247,688 to 1,248,935
_RS26250
RR42_RS26255: RR42_RS26255 - aldehyde dehydrogenase, at 1,248,972 to 1,250,471
_RS26255
Group
Condition
RR42
_RS26235
RR42
_RS26240
RR42
_RS26245
RR42
_RS26250
RR42
_RS26255
nitrogen source
nitrite (N)
-1.8
-0.1
+0.0
-0.0
-0.1
carbon source
Protocatechuic Acid (C)
-2.0
-0.2
+0.0
+0.2
+0.0
stress
R2A with Doxycycline hyclate 0.0001 mg/ml
-1.1
-0.1
-0.1
+0.1
-0.3
carbon source
Protocatechuic Acid (C)
-1.3
+0.1
-0.4
+0.0
+0.2
nitrogen source
D-Alanine (N)
-0.8
-0.1
-0.1
-0.3
-0.1
nitrogen source
L-Lysine (N)
-0.8
-0.3
+0.0
-0.3
-0.0
stress
R2A with Chlorite 4 mM
-0.7
-0.0
-0.1
-0.3
-0.2
carbon source
L-Glutamine (C)
-0.6
-0.2
-0.1
-0.3
-0.1
carbon source
a-Ketoglutaric (C)
-0.6
-0.2
-0.1
-0.3
-0.1
carbon source
Ethanol (C)
-0.6
+0.1
-0.2
-0.4
-0.0
nitrogen source
L-Citrulline (N)
-0.0
-0.2
-0.7
-0.1
-0.1
carbon source
a-Ketoglutaric (C)
-0.5
-0.1
-0.2
-0.1
-0.2
stress
R2A with Vancomycin 0.5 mg/ml
-0.4
-0.1
+0.1
-0.0
-0.6
stress
R2A with Lomefloxacin 0.001 mM
-0.8
-0.2
+0.1
-0.2
+0.1
carbon source
L-Glutamine (C)
-0.7
-0.3
+0.1
+0.1
-0.0
carbon source
Pimelic (C)
-0.9
+0.1
+0.0
-0.0
+0.2
stress
R2A with Thallium(I) acetate 0.001 mg/ml
-0.4
-0.3
+0.1
+0.1
-0.2
nitrogen source
D-Alanine (N)
-0.9
+0.2
-0.0
-0.1
+0.1
carbon source
L-Lactate (C)
-0.3
-0.2
-0.3
+0.0
+0.2
carbon source
Pimelic (C)
-0.9
+0.3
-0.1
+0.1
+0.1
stress
R2A with Cisplatin 0.001 mg/ml
-0.4
-0.1
-0.1
+0.4
-0.2
stress
R2A with D-Cycloserine 0.01 mg/ml
+0.4
-0.0
-0.2
-0.5
-0.1
stress
R2A with Cobalt chloride 0.5 mM
-0.8
-0.1
-0.1
+0.5
+0.2
stress
R2A with A22 0.01 mg/ml
+0.5
-0.1
-0.2
-0.2
-0.1
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.6
-0.0
-0.1
-0.5
-0.1
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.8
-0.1
-0.3
-0.0
-0.2
stress
R2A with nitrate 150 mM
+0.6
-0.1
-0.1
-0.3
+0.0
carbon source
adipate (C)
-0.5
+0.2
+0.1
+0.3
+0.3
stress
R2A with Paraquat dichloride 0.064 mg/ml
+0.2
-0.2
-0.2
+0.1
+0.4
carbon source
L-Proline (C)
+1.1
-0.2
-0.1
-0.4
+0.1
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