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Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS26205 and RR42_RS26210 are separated by 71 nucleotides
RR42_RS26210 and RR42_RS26215 are separated by 192 nucleotides
RR42_RS26215 and RR42_RS26220 are separated by 182 nucleotides
RR42_RS26220 and RR42_RS26225 overlap by 4 nucleotides
RR42_RS26205: RR42_RS26205 - LysR family transcriptional regulator, at 1,237,265 to 1,238,263
_RS26205
RR42_RS26210: RR42_RS26210 - hypothetical protein, at 1,238,335 to 1,238,655
_RS26210
RR42_RS26215: RR42_RS26215 - diguanylate cyclase, at 1,238,848 to 1,239,825
_RS26215
RR42_RS26220: RR42_RS26220 - citrate lyase subunit beta, at 1,240,008 to 1,240,925
_RS26220
RR42_RS26225: RR42_RS26225 - dimethylmenaquinone methyltransferase, at 1,240,922 to 1,241,578
_RS26225
Group
Condition
RR42
_RS26205
RR42
_RS26210
RR42
_RS26215
RR42
_RS26220
RR42
_RS26225
stress
R2A with D-Cycloserine 0.5 mg/ml
-1.0
+0.2
N.D.
-2.0
N.D.
stress
R2A with Lomefloxacin 0.001 mM
-0.0
+0.2
N.D.
-2.0
N.D.
stress
R2A with Doxycycline hyclate 0.0001 mg/ml
-0.3
-0.4
N.D.
-0.9
N.D.
stress
R2A with Paraquat dichloride 0.064 mg/ml
+0.4
-0.2
N.D.
-1.7
N.D.
carbon source
4-Hydroxybenzoic Acid (C)
-0.3
+0.2
N.D.
-1.4
N.D.
stress
R2A with Vancomycin 0.5 mg/ml
+0.1
-0.0
N.D.
-1.5
N.D.
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.3
+0.2
N.D.
-1.3
N.D.
stress
R2A with nitrate 200 mM
-0.0
-0.1
N.D.
-1.1
N.D.
carbon source
propionate (C)
-0.1
+0.1
N.D.
-1.2
N.D.
stress
R2A with Vancomycin 0.5 mg/ml
-0.3
+0.2
N.D.
-1.1
N.D.
carbon source
L-Malic (C)
-0.5
-0.0
N.D.
-0.6
N.D.
carbon source
Azelaic (C)
+0.3
-0.1
N.D.
-1.2
N.D.
stress
R2A with nitrate 200 mM
+0.2
-0.1
N.D.
-1.0
N.D.
carbon source
L-Glutamine (C)
+0.4
+0.1
N.D.
-1.2
N.D.
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
-0.6
+0.5
N.D.
-0.7
N.D.
carbon source
D,L-Lactate (C)
+0.3
-0.0
N.D.
-1.0
N.D.
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.0
+0.2
N.D.
-0.9
N.D.
carbon source
L-Lactate (C)
+0.4
-0.1
N.D.
-0.9
N.D.
stress
R2A with Cobalt chloride 0.3 mM
+0.4
-0.2
N.D.
-0.7
N.D.
carbon source
Valeric (C)
+0.4
+0.2
N.D.
-0.6
N.D.
carbon source
Dodecandioic (C)
-0.4
-0.1
N.D.
+0.7
N.D.
stress
R2A with Nickel (II) chloride 0.35 mM
+0.8
-0.4
N.D.
-0.1
N.D.
carbon source
L-Alanine (C)
-0.5
+0.1
N.D.
+0.8
N.D.
carbon source
Disodium Glutarate (C)
-0.6
+0.0
N.D.
+1.1
N.D.
carbon source
succinate (C)
-0.3
+0.1
N.D.
+0.9
N.D.
temperature
R2A 23C
+0.3
-0.2
N.D.
+0.7
N.D.
carbon source
Valeric (C)
-0.5
+0.1
N.D.
+1.2
N.D.
nitrogen source
L-Glutamine (N)
+0.4
+0.1
N.D.
+0.7
N.D.
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.1
+0.3
N.D.
+0.9
N.D.
carbon source
Suberic (C)
+0.7
+0.0
N.D.
+0.6
N.D.
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