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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS26185 and RR42_RS26195 are separated by 885 nucleotides
RR42_RS26195 and RR42_RS26200 overlap by 4 nucleotides
RR42_RS26200 and RR42_RS26205 are separated by 125 nucleotides
RR42_RS26205 and RR42_RS26210 are separated by 71 nucleotides
RR42_RS26185: RR42_RS26185 - hypothetical protein, at 1,232,815 to 1,234,317
_RS26185
RR42_RS26195: RR42_RS26195 - hypothetical protein, at 1,235,203 to 1,236,510
_RS26195
RR42_RS26200: RR42_RS26200 - hypothetical protein, at 1,236,507 to 1,237,139
_RS26200
RR42_RS26205: RR42_RS26205 - LysR family transcriptional regulator, at 1,237,265 to 1,238,263
_RS26205
RR42_RS26210: RR42_RS26210 - hypothetical protein, at 1,238,335 to 1,238,655
_RS26210
Group
Condition
RR42
_RS26185
RR42
_RS26195
RR42
_RS26200
RR42
_RS26205
RR42
_RS26210
carbon source
L-Asparagine (C)
-0.1
-0.2
-1.3
-0.2
-0.2
stress
R2A with Zinc 0.1 mM
+0.1
-0.2
-1.7
-0.0
+0.1
carbon source
a-Ketoglutaric (C)
-0.1
-0.0
-1.2
-0.3
+0.1
carbon source
L-Histidine (C)
-0.1
-0.3
-1.3
+0.3
-0.0
stress
R2A with Cobalt chloride 0.5 mM
-0.0
+0.2
-1.4
-0.1
-0.1
nitrogen source
L-Lysine (N)
-0.2
-0.2
-0.5
-0.5
+0.0
stress
R2A with Sisomicin 0.035 mg/ml
+0.0
-0.0
-1.4
+0.3
-0.2
stress
R2A with Doxycycline hyclate 0.0001 mg/ml
+0.1
-0.2
-0.4
-0.3
-0.4
nitrogen source
L-Isoleucine (N)
-0.1
+0.2
-1.3
-0.0
+0.1
carbon source
succinate (C)
+0.2
-0.2
-0.7
-0.3
-0.0
carbon source
D-Lactate (C)
-0.1
+0.1
-1.3
+0.2
+0.1
stress
R2A with D-Cycloserine 0.5 mg/ml
+0.2
+0.1
-0.3
-1.0
+0.2
stress
R2A with Nickel (II) chloride 0.35 mM
+0.1
-0.3
-0.4
+0.8
-0.4
nitrogen source
L-Tryptophan (N)
+0.1
-0.2
-0.6
+0.5
+0.1
carbon source
propionate (C)
+0.1
-0.6
+0.9
-0.2
-0.0
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
-0.1
+0.2
+0.3
-0.6
+0.5
carbon source
Disodium Glutarate (C)
-0.1
-0.1
+1.2
-0.6
+0.0
lb
LB
-0.1
-0.4
+0.3
+0.4
+0.4
carbon source
Heptanoic (C)
+0.1
-0.1
+1.0
-0.4
+0.1
carbon source
Octanoic (C)
-0.1
-0.1
+1.2
-0.3
+0.1
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
+0.2
+0.1
+1.0
-0.3
-0.2
carbon source
Heptanoic (C)
+0.2
-0.3
+0.8
+0.2
-0.0
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
+0.2
+0.3
+0.8
-0.3
+0.0
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.1
-0.2
+1.4
-0.1
+0.1
nitrogen source
Glucuronamide (N)
-0.3
+0.1
+0.9
+0.4
-0.1
carbon source
Valeric (C)
+0.2
-0.3
+0.6
+0.4
+0.2
carbon source
Hexanoic (C)
-0.2
-0.1
+1.5
+0.0
+0.0
stress
R2A with Nickel (II) chloride 0.5 mM
+0.0
+0.2
+1.0
+0.3
+0.0
carbon source
Protocatechuic Acid (C)
+0.3
+0.0
+1.6
+0.2
-0.1
stress
R2A with Lomefloxacin 0.001 mM
+0.0
+0.4
+1.9
-0.0
+0.2
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