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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS26000 and RR42_RS26005 are separated by 330 nucleotides
RR42_RS26005 and RR42_RS26010 are separated by 791 nucleotides
RR42_RS26010 and RR42_RS26015 are separated by 169 nucleotides
RR42_RS26015 and RR42_RS26020 are separated by 260 nucleotides
RR42_RS26000: RR42_RS26000 - cytochrome O ubiquinol oxidase subunit II, at 1,177,302 to 1,178,063
_RS26000
RR42_RS26005: RR42_RS26005 - GntR family transcriptional regulator, at 1,178,394 to 1,179,797
_RS26005
RR42_RS26010: RR42_RS26010 - integrase, at 1,180,589 to 1,181,761
_RS26010
RR42_RS26015: RR42_RS26015 - hypothetical protein, at 1,181,931 to 1,183,433
_RS26015
RR42_RS26020: RR42_RS26020 - hydrolase, at 1,183,694 to 1,184,539
_RS26020
Group
Condition
RR42
_RS26000
RR42
_RS26005
RR42
_RS26010
RR42
_RS26015
RR42
_RS26020
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.1
-0.4
N.D.
-0.2
-0.2
lb
LB
-0.9
-0.1
N.D.
+0.0
+0.2
stress
R2A with Vancomycin 0.5 mg/ml
-0.3
-0.6
N.D.
-0.2
+0.2
temperature
R2A 23C
-0.1
-0.3
N.D.
-0.1
-0.3
carbon source
L-Asparagine (C)
+0.1
+0.2
N.D.
-0.2
-0.7
carbon source
Ethanol (C)
-0.3
+0.1
N.D.
-0.2
-0.2
carbon source
Suberic (C)
-0.3
-0.3
N.D.
-0.3
+0.3
carbon source
Disodium Glutarate (C)
-0.3
-0.0
N.D.
+0.2
-0.4
stress
R2A with Nickel (II) chloride 0.35 mM
-0.1
-0.3
N.D.
-0.2
+0.2
carbon source
Octanoic (C)
-0.2
-0.3
N.D.
+0.2
-0.1
carbon source
Suberic (C)
-0.1
-0.3
N.D.
+0.3
-0.2
stress
R2A with Thallium(I) acetate 0.001 mg/ml
-0.4
-0.2
N.D.
+0.2
+0.1
carbon source
Pimelic (C)
+0.3
-0.4
N.D.
+0.1
-0.3
stress
R2A with Zinc 0.1 mM
-0.2
+0.2
N.D.
+0.1
-0.2
carbon source
propionate (C)
-0.1
-0.3
N.D.
+0.2
+0.1
carbon source
Dodecandioic (C)
-0.1
-0.4
N.D.
+0.1
+0.4
nitrogen source
nitrite (N)
-0.3
+0.4
N.D.
-0.1
+0.1
carbon source
L-Tryptophan (C)
+0.2
+0.1
N.D.
+0.2
-0.3
stress
R2A with Chloride 300 mM
-0.2
+0.0
N.D.
-0.1
+0.5
nitrogen source
L-Tryptophan (N)
+0.2
+0.3
N.D.
-0.2
-0.1
stress
R2A with copper (II) chloride 0.25 mM
-0.0
-0.1
N.D.
-0.1
+0.5
carbon source
Disodium Glutarate (C)
-0.0
-0.3
N.D.
+0.2
+0.3
carbon source
Carbon source Phenylacetic 2.5 mM
+0.3
+0.3
N.D.
+0.1
-0.5
stress
R2A with Paraquat dichloride 0.064 mg/ml
-0.2
+0.3
N.D.
-0.2
+0.5
nitrogen source
L-Serine (N)
+0.3
+0.3
N.D.
-0.0
-0.2
nitrogen source
L-Leucine (N)
+0.4
-0.3
N.D.
-0.0
+0.3
stress
R2A with A22 0.01 mg/ml
-0.2
+0.3
N.D.
+0.2
+0.3
nitrogen source
L-Glutamine (N)
+0.4
-0.1
N.D.
-0.2
+0.3
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.1
-0.0
N.D.
+0.3
+0.4
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+0.1
+0.0
N.D.
+0.4
+0.4
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