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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS25955 and RR42_RS25960 are separated by 359 nucleotides
RR42_RS25960 and RR42_RS25965 are separated by 305 nucleotides
RR42_RS25965 and RR42_RS25970 are separated by 124 nucleotides
RR42_RS25970 and RR42_RS25975 are separated by 94 nucleotides
RR42_RS25955: RR42_RS25955 - transcriptional regulator, at 1,165,543 to 1,165,941
_RS25955
RR42_RS25960: RR42_RS25960 - hypothetical protein, at 1,166,301 to 1,170,614
_RS25960
RR42_RS25965: RR42_RS25965 - LuxR family transcriptional regulator, at 1,170,920 to 1,171,579
_RS25965
RR42_RS25970: RR42_RS25970 - acyl-CoA dehydrogenase, at 1,171,704 to 1,172,861
_RS25970
RR42_RS25975: RR42_RS25975 - hypothetical protein, at 1,172,956 to 1,173,195
_RS25975
Group
Condition
RR42
_RS25955
RR42
_RS25960
RR42
_RS25965
RR42
_RS25970
RR42
_RS25975
stress
R2A with Polymyxin B sulfate 0.005 mg/ml
N.D.
-0.0
-0.3
-1.2
N.D.
lb
LB
N.D.
-0.0
-1.0
-0.4
N.D.
stress
R2A with D-Cycloserine 0.5 mg/ml
N.D.
-0.2
-0.5
-0.3
N.D.
stress
R2A with Cisplatin 0.001 mg/ml
N.D.
-0.1
-0.6
+0.4
N.D.
stress
R2A with Cobalt chloride 0.5 mM
N.D.
-0.1
+0.4
-0.4
N.D.
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
N.D.
-0.0
+0.7
-0.6
N.D.
stress
R2A with Doxycycline hyclate 0.0001 mg/ml
N.D.
+0.1
-0.3
+0.7
N.D.
nitrogen source
Glucuronamide (N)
N.D.
+0.0
+0.8
-0.4
N.D.
nitrogen source
L-Tryptophan (N)
N.D.
+0.0
+0.7
-0.2
N.D.
carbon source
Octanoic (C)
N.D.
+0.1
+0.7
-0.3
N.D.
r2a
R2A
N.D.
+0.0
+0.7
-0.2
N.D.
nitrogen source
L-Citrulline (N)
N.D.
+0.1
+0.8
-0.2
N.D.
carbon source
D-Gluconic Acid (C)
N.D.
-0.1
+0.4
+0.5
N.D.
carbon source
Azelaic (C)
N.D.
+0.1
+0.4
+0.4
N.D.
carbon source
succinate (C)
N.D.
+0.0
+0.5
+0.5
N.D.
nitrogen source
L-Serine (N)
N.D.
+0.1
+0.7
+0.2
N.D.
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
N.D.
-0.0
+0.3
+0.7
N.D.
carbon source
Octanoic (C)
N.D.
-0.0
+0.9
+0.2
N.D.
carbon source
Suberic (C)
N.D.
-0.1
+0.9
+0.3
N.D.
carbon source
Dodecandioic (C)
N.D.
+0.1
+0.6
+0.4
N.D.
carbon source
L-Malic (C)
N.D.
+0.1
+0.4
+0.6
N.D.
carbon source
Disodium Glutarate (C)
N.D.
+0.1
+0.6
+0.4
N.D.
carbon source
Pimelic (C)
N.D.
+0.0
+0.5
+0.7
N.D.
carbon source
Heptanoic (C)
N.D.
-0.1
+0.8
+0.5
N.D.
carbon source
succinate (C)
N.D.
+0.0
+0.8
+0.4
N.D.
carbon source
Protocatechuic Acid (C)
N.D.
+0.1
+0.8
+0.3
N.D.
carbon source
Azelaic (C)
N.D.
+0.1
+0.7
+0.5
N.D.
carbon source
Suberic (C)
N.D.
+0.0
+0.7
+0.5
N.D.
carbon source
adipate (C)
N.D.
+0.1
+0.7
+0.8
N.D.
carbon source
adipate (C)
N.D.
+0.1
+1.0
+0.6
N.D.
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