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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS25935 and RR42_RS25940 are separated by 367 nucleotides
RR42_RS25940 and RR42_RS25945 are separated by 163 nucleotides
RR42_RS25945 and RR42_RS25950 are separated by 16 nucleotides
RR42_RS25950 and RR42_RS25955 are separated by 38 nucleotides
RR42_RS25935: RR42_RS25935 - mechanosensitive ion channel protein, at 1,158,743 to 1,161,238
_RS25935
RR42_RS25940: RR42_RS25940 - AraC family transcriptional regulator, at 1,161,606 to 1,162,523
_RS25940
RR42_RS25945: RR42_RS25945 - MFS transporter, at 1,162,687 to 1,164,318
_RS25945
RR42_RS25950: RR42_RS25950 - hypothetical protein, at 1,164,335 to 1,165,504
_RS25950
RR42_RS25955: RR42_RS25955 - transcriptional regulator, at 1,165,543 to 1,165,941
_RS25955
Group
Condition
RR42
_RS25935
RR42
_RS25940
RR42
_RS25945
RR42
_RS25950
RR42
_RS25955
stress
R2A with Cisplatin 0.001 mg/ml
+0.0
-0.0
-0.3
-0.6
N.D.
carbon source
Protocatechuic Acid (C)
+0.0
-0.4
-0.4
-0.0
N.D.
carbon source
Protocatechuic Acid (C)
-0.2
-0.1
+0.1
-0.5
N.D.
stress
R2A with nitrate 150 mM
+0.1
-0.3
-0.3
-0.1
N.D.
carbon source
Hexanoic (C)
-0.1
+0.2
-0.2
-0.3
N.D.
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.4
+0.2
+0.1
-0.2
N.D.
carbon source
pyruvate (C)
-0.3
-0.2
+0.3
-0.1
N.D.
stress
R2A with Lomefloxacin 0.001 mM
-0.1
-0.2
-0.3
+0.4
N.D.
carbon source
propionate (C)
-0.2
+0.0
+0.2
-0.3
N.D.
carbon source
L-Lactate (C)
-0.3
-0.3
+0.4
+0.0
N.D.
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.2
-0.4
+0.2
-0.1
N.D.
carbon source
Octanoic (C)
+0.3
+0.1
-0.2
-0.2
N.D.
carbon source
Dodecandioic (C)
+0.3
+0.1
-0.0
-0.3
N.D.
stress
R2A with Cobalt chloride 0.5 mM
+0.2
-0.2
+0.4
-0.3
N.D.
carbon source
L-Glutamine (C)
-0.4
+0.1
+0.2
+0.1
N.D.
stress
R2A with Nickel (II) chloride 0.35 mM
-0.2
+0.1
+0.3
-0.1
N.D.
stress
R2A with Nickel (II) chloride 0.35 mM
+0.4
-0.2
+0.0
-0.1
N.D.
carbon source
Valeric (C)
+0.4
-0.3
+0.1
-0.1
N.D.
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.3
+0.1
+0.3
+0.0
N.D.
carbon source
L-Alanine (C)
-0.1
-0.2
+0.3
+0.1
N.D.
carbon source
Heptanoic (C)
+0.3
-0.2
+0.2
-0.1
N.D.
carbon source
L-Histidine (C)
-0.2
-0.1
+0.3
+0.2
N.D.
nitrogen source
Glucuronamide (N)
+0.1
-0.2
+0.4
+0.1
N.D.
stress
R2A with Sisomicin 0.035 mg/ml
-0.1
+0.0
+0.3
+0.2
N.D.
nitrogen source
L-Tryptophan (N)
-0.1
-0.1
+0.4
+0.2
N.D.
lb
LB
-0.5
+0.3
+0.9
-0.2
N.D.
carbon source
L-Glutamine (C)
+0.1
+0.2
+0.2
-0.1
N.D.
nitrogen source
L-Tryptophan (N)
+0.1
-0.3
+0.6
+0.1
N.D.
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.1
-0.0
+0.6
-0.0
N.D.
stress
R2A with Doxycycline hyclate 0.0001 mg/ml
+0.2
+0.1
+0.2
+0.3
N.D.
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