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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS25880 and RR42_RS25885 are separated by 477 nucleotides
RR42_RS25885 and RR42_RS25890 are separated by 247 nucleotides
RR42_RS25890 and RR42_RS25895 are separated by 148 nucleotides
RR42_RS25895 and RR42_RS25900 are separated by 268 nucleotides
RR42_RS25880: RR42_RS25880 - hypothetical protein, at 1,146,755 to 1,147,579
_RS25880
RR42_RS25885: RR42_RS25885 - diguanylate cyclase, at 1,148,057 to 1,149,199
_RS25885
RR42_RS25890: RR42_RS25890 - Branched-chain amino acid aminotransferase (EC 2.6.1.42)
(from data)
, at 1,149,447 to 1,150,538
_RS25890
RR42_RS25895: RR42_RS25895 - IclR family transcriptional regulator, at 1,150,687 to 1,151,460
_RS25895
RR42_RS25900: RR42_RS25900 - enoyl-CoA hydratase, at 1,151,729 to 1,152,505
_RS25900
Group
Condition
RR42
_RS25880
RR42
_RS25885
RR42
_RS25890
RR42
_RS25895
RR42
_RS25900
nitrogen source
L-Isoleucine (N)
-0.1
+0.0
-1.2
-0.3
-0.3
stress
R2A with Bacitracin 0.5 mg/ml
-0.5
-0.3
-0.3
-0.4
-0.2
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.3
-0.3
-0.2
-0.8
-0.2
carbon source
L-Leucine (C)
-0.4
-0.1
-0.7
-0.4
-0.1
carbon source
L-Leucine (C)
-0.1
-0.1
-0.4
-0.2
-0.5
nitrogen source
L-Isoleucine (N)
+0.3
+0.0
-1.3
-0.3
+0.1
nitrogen source
L-Glutamine (N)
-0.0
-0.4
-0.1
-0.5
-0.2
carbon source
Carbon source Phenylacetic 2.5 mM
-0.1
-0.1
-0.2
-0.8
+0.1
stress
R2A with Cobalt chloride 0.5 mM
-0.4
-0.1
-0.3
-0.3
-0.0
stress
R2A with sodium fluoride 100 mM
-0.3
-0.2
-0.1
-0.4
-0.2
nitrogen source
L-Leucine (N)
-0.1
+0.1
-0.9
-0.3
+0.1
carbon source
L-Asparagine (C)
-0.2
-0.5
-0.1
+0.1
-0.3
stress
R2A with Zinc 0.1 mM
+0.0
+0.1
+0.1
-0.6
-0.5
carbon source
Suberic (C)
-0.2
+0.1
-0.4
-0.3
-0.1
temperature
R2A 23C
-0.1
+0.1
+0.2
-0.5
-0.3
nitrogen source
D-Alanine (N)
+0.3
-0.3
-0.3
-0.2
-0.1
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.4
-0.3
+0.3
-0.1
-0.2
carbon source
L-Histidine (C)
-0.6
-0.3
+0.0
+0.5
-0.2
stress
R2A with Cobalt chloride 0.3 mM
-0.0
+0.0
-0.2
-0.8
+0.4
nitrogen source
L-Valine (N)
+0.4
-0.1
-0.7
-0.2
+0.2
nitrogen source
L-Leucine (N)
+0.2
-0.2
-0.7
+0.0
+0.2
nitrogen source
L-Serine (N)
-0.1
-0.2
+0.3
+0.3
-0.3
oxygen_nitrate
exometabolites; 5% oxygen; 5 mM nitrate
-0.1
+0.0
-0.1
+0.7
-0.4
carbon source
Protocatechuic Acid (C)
+0.1
+0.1
+0.5
-0.0
-0.4
stress
R2A with Paraquat dichloride 0.064 mg/ml
+0.5
-0.3
+0.1
+0.3
-0.3
stress
R2A with Vancomycin 0.5 mg/ml
-0.4
+0.0
+0.4
+0.3
+0.1
stress
R2A with Nickel (II) chloride 0.35 mM
+0.2
+0.2
+0.1
-0.4
+0.2
stress
R2A with Lomefloxacin 0.001 mM
+0.6
-0.2
+0.0
+0.5
-0.1
lb
LB
+0.1
-0.1
+0.0
+0.7
+0.4
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.3
+0.0
+0.1
+1.0
+0.3
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RR42_RS25890
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