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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS25770 and RR42_RS25775 are separated by 101 nucleotides
RR42_RS25775 and RR42_RS25780 are separated by 81 nucleotides
RR42_RS25780 and RR42_RS25785 are separated by 373 nucleotides
RR42_RS25785 and RR42_RS25790 are separated by 317 nucleotides
RR42_RS25770: RR42_RS25770 - glyoxalase, at 1,121,295 to 1,121,675
_RS25770
RR42_RS25775: RR42_RS25775 - alcohol dehydrogenase, at 1,121,777 to 1,122,883
_RS25775
RR42_RS25780: RR42_RS25780 - taurine dioxygenase, at 1,122,965 to 1,123,780
_RS25780
RR42_RS25785: RR42_RS25785 - TetR family transcriptional regulator, at 1,124,154 to 1,124,855
_RS25785
RR42_RS25790: RR42_RS25790 - acylaldehyde oxidase, at 1,125,173 to 1,127,419
_RS25790
Group
Condition
RR42
_RS25770
RR42
_RS25775
RR42
_RS25780
RR42
_RS25785
RR42
_RS25790
lb
LB
-0.0
N.D.
-0.4
-6.3
-0.2
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
+0.1
N.D.
-0.3
-4.0
-0.0
stress
R2A with Doxycycline hyclate 0.0001 mg/ml
-0.3
N.D.
+0.1
-2.8
-0.1
carbon source
Protocatechuic Acid (C)
-0.3
N.D.
+0.1
-2.6
-0.0
carbon source
L-Alanine (C)
-0.1
N.D.
-0.2
-2.5
-0.0
nitrogen source
L-Lysine (N)
-0.4
N.D.
-0.1
-2.1
+0.0
nitrogen source
L-Threonine (N)
+0.1
N.D.
-0.2
-2.4
+0.1
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.6
N.D.
+0.2
-2.0
-0.0
nitrogen source
nitrite (N)
+0.2
N.D.
+0.2
-2.9
+0.1
stress
R2A with sodium fluoride 100 mM
-0.2
N.D.
-0.3
-1.9
-0.1
carbon source
Pimelic (C)
-0.1
N.D.
-0.1
-2.1
+0.0
carbon source
adipate (C)
+0.3
N.D.
-0.2
-2.2
+0.1
carbon source
L-Glutamine (C)
+0.0
N.D.
-0.2
-1.9
+0.1
carbon source
L-Alanine (C)
-0.4
N.D.
-0.1
-1.5
+0.0
nitrogen source
D-Alanine (N)
+0.3
N.D.
+0.2
-2.5
-0.0
carbon source
Azelaic (C)
+0.0
N.D.
+0.1
-2.0
-0.1
nitrogen source
D-Alanine (N)
-0.2
N.D.
-0.1
-1.6
+0.1
carbon source
succinate (C)
-0.2
N.D.
-0.1
-1.7
+0.0
carbon source
pyruvate (C)
-0.6
N.D.
+0.3
-1.5
-0.0
carbon source
Carbon source Phenylacetic 2.5 mM
+0.3
N.D.
-0.1
-2.0
+0.0
nitrogen source
L-Glutamine (N)
+0.3
N.D.
+0.2
-2.2
-0.1
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.2
N.D.
-0.7
-1.4
+0.1
carbon source
L-Glutamine (C)
+0.1
N.D.
+0.1
-1.7
+0.1
carbon source
Heptanoic (C)
+0.1
N.D.
+0.2
-1.6
+0.1
nitrogen source
L-Citrulline (N)
+0.4
N.D.
+0.1
-1.9
+0.1
carbon source
adipate (C)
+0.3
N.D.
+0.1
-1.6
+0.1
carbon source
Octanoic (C)
+0.1
N.D.
+0.5
-1.6
-0.1
nitrogen source
L-Leucine (N)
+0.6
N.D.
+0.3
-1.5
+0.0
stress
R2A with Lomefloxacin 0.00075 mM
+0.1
N.D.
+0.2
+3.1
+0.1
stress
R2A with Lomefloxacin 0.001 mM
-0.4
N.D.
-0.2
+4.8
+0.1
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