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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS25755 and RR42_RS25760 are separated by 48 nucleotides
RR42_RS25760 and RR42_RS25765 are separated by 90 nucleotides
RR42_RS25765 and RR42_RS25770 are separated by 198 nucleotides
RR42_RS25770 and RR42_RS25775 are separated by 101 nucleotides
RR42_RS25755: RR42_RS25755 - IclR family transcriptional regulator, at 1,118,583 to 1,119,440
_RS25755
RR42_RS25760: RR42_RS25760 - salicylate hydroxylase, at 1,119,489 to 1,120,619
_RS25760
RR42_RS25765: RR42_RS25765 - hypothetical protein, at 1,120,710 to 1,121,096
_RS25765
RR42_RS25770: RR42_RS25770 - glyoxalase, at 1,121,295 to 1,121,675
_RS25770
RR42_RS25775: RR42_RS25775 - alcohol dehydrogenase, at 1,121,777 to 1,122,883
_RS25775
Group
Condition
RR42
_RS25755
RR42
_RS25760
RR42
_RS25765
RR42
_RS25770
RR42
_RS25775
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.7
-0.3
-1.6
-0.3
N.D.
stress
R2A with Sisomicin 0.035 mg/ml
-1.6
-0.0
+0.5
-0.5
N.D.
carbon source
Ethanol (C)
-0.6
+0.1
-0.7
-0.3
N.D.
carbon source
succinate (C)
-0.5
+0.1
-0.8
-0.2
N.D.
carbon source
Hexanoic (C)
-1.1
-0.1
-0.3
+0.0
N.D.
carbon source
D-Fructose (C)
-0.9
+0.1
-0.5
-0.1
N.D.
carbon source
Protocatechuic Acid (C)
+0.2
-0.4
-0.8
-0.3
N.D.
nitrogen source
L-Tryptophan (N)
-1.0
+0.1
-0.3
-0.1
N.D.
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.9
-0.1
+0.2
-0.4
N.D.
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.9
-0.1
+0.3
-0.6
N.D.
nitrogen source
nitrite (N)
-0.9
-0.2
-0.2
+0.2
N.D.
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
-1.0
-0.3
+0.1
+0.1
N.D.
nitrogen source
L-Glutamine (N)
-1.3
-0.1
+0.1
+0.3
N.D.
carbon source
pyruvate (C)
-0.4
-0.2
+0.2
-0.6
N.D.
lb
LB
-1.6
-0.2
+1.0
-0.0
N.D.
nitrogen source
D-Alanine (N)
-0.5
+0.3
-0.3
-0.2
N.D.
carbon source
Protocatechuic Acid (C)
-0.3
-0.1
-0.6
+0.4
N.D.
carbon source
Trisodium citrate (C)
-1.1
+0.1
+0.4
-0.0
N.D.
stress
R2A with Vancomycin 0.5 mg/ml
+0.1
+0.5
-1.0
-0.1
N.D.
stress
R2A with A22 0.01 mg/ml
-0.5
-0.2
+0.6
-0.3
N.D.
stress
R2A with Cisplatin 0.001 mg/ml
-0.5
-0.1
+0.7
-0.5
N.D.
carbon source
L-Histidine (C)
-0.7
-0.0
+0.5
-0.2
N.D.
carbon source
a-Ketoglutaric (C)
+0.3
+0.2
-0.6
-0.3
N.D.
carbon source
L-Lactate (C)
-0.5
+0.2
+0.4
-0.3
N.D.
stress
R2A with Lomefloxacin 0.001 mM
-0.5
-0.1
+0.9
-0.4
N.D.
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.9
-0.2
+0.7
+0.2
N.D.
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.4
-0.4
+0.8
+0.2
N.D.
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
+1.0
+0.1
+0.2
-0.2
N.D.
carbon source
Carbon source Phenylacetic 2.5 mM
+0.6
-0.1
+0.3
+0.3
N.D.
stress
R2A with copper (II) chloride 0.25 mM
+0.9
+0.1
+0.4
-0.1
N.D.
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