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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS25700 and RR42_RS25705 are separated by 722 nucleotides
RR42_RS25705 and RR42_RS25710 are separated by 180 nucleotides
RR42_RS25710 and RR42_RS25715 are separated by 217 nucleotides
RR42_RS25715 and RR42_RS25720 are separated by 291 nucleotides
RR42_RS25700: RR42_RS25700 - hypothetical protein, at 1,108,432 to 1,109,394
_RS25700
RR42_RS25705: RR42_RS25705 - hypothetical protein, at 1,110,117 to 1,110,431
_RS25705
RR42_RS25710: RR42_RS25710 - Clp protease, at 1,110,612 to 1,110,956
_RS25710
RR42_RS25715: RR42_RS25715 - hypothetical protein, at 1,111,174 to 1,111,404
_RS25715
RR42_RS25720: RR42_RS25720 - hypothetical protein, at 1,111,696 to 1,112,091
_RS25720
Group
Condition
RR42
_RS25700
RR42
_RS25705
RR42
_RS25710
RR42
_RS25715
RR42
_RS25720
lb
LB
-0.0
-1.3
-0.2
+0.2
-0.6
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.1
-0.2
-0.4
-0.3
-0.6
stress
R2A with Nickel (II) chloride 0.5 mM
+0.1
-0.4
+0.3
-0.8
-0.3
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.1
-0.1
-0.3
+0.1
-0.7
stress
R2A with Vancomycin 0.5 mg/ml
+0.0
-0.8
+0.3
-0.2
-0.4
carbon source
Carbon source D,L-Lactate 10 mM
+0.0
-0.5
+0.1
-0.2
-0.5
stress
R2A with Cobalt chloride 0.3 mM
+0.2
-0.3
-0.2
-0.7
+0.1
stress
R2A with Nickel (II) chloride 0.35 mM
+0.3
-0.3
-0.1
-0.3
-0.3
stress
R2A with Chlorite 4 mM
+0.1
-0.7
+0.1
+0.3
-0.4
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.2
-0.0
+0.5
-1.1
+0.3
stress
R2A with Lomefloxacin 0.00075 mM
+0.0
-0.8
-0.1
+0.5
+0.0
carbon source
Protocatechuic Acid (C)
-0.2
-0.5
-0.2
+0.4
+0.2
stress
R2A with Lomefloxacin 0.001 mM
-0.2
+0.1
+0.3
+0.4
-0.9
carbon source
L-Leucine (C)
-0.0
-0.1
+0.1
-0.8
+0.6
stress
R2A with Paraquat dichloride 0.064 mg/ml
-0.4
+0.5
-0.5
+0.2
-0.0
carbon source
D-Lactate (C)
+0.1
-0.3
+0.2
-0.4
+0.3
stress
R2A with Cisplatin 0.001 mg/ml
-0.2
-0.3
+0.9
-0.6
+0.2
carbon source
Suberic (C)
+0.0
-0.2
+0.1
+0.6
-0.5
carbon source
L-Alanine (C)
+0.2
+0.1
-0.3
-0.3
+0.7
temperature
R2A 37C
+0.2
-0.5
+0.3
-0.2
+0.4
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.1
+0.4
+0.4
-0.3
-0.3
carbon source
Hexanoic (C)
+0.2
-0.0
-0.2
+0.8
-0.2
temperature
R2A 23C
+0.2
-0.5
+0.7
-0.1
+0.4
carbon source
L-Phenylalanine (C)
-0.1
+0.3
-0.1
-0.3
+0.8
carbon source
L-Alanine (C)
+0.1
+0.2
+0.4
-0.4
+0.6
nitrogen source
L-Threonine (N)
+0.1
+0.3
+0.1
-0.3
+0.6
nitrogen source
casaminos (N)
-0.0
+0.5
-0.1
+0.4
+0.4
nitrogen source
L-Glutamine (N)
-0.1
+0.6
+0.4
+0.2
+0.1
carbon source
Protocatechuic Acid (C)
+0.1
-0.4
+0.2
+0.7
+0.7
carbon source
Azelaic (C)
+0.2
+0.5
+0.1
+0.6
+0.3
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RR42_RS25710
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