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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS25595 and RR42_RS25600 are separated by 128 nucleotides
RR42_RS25600 and RR42_RS25605 are separated by 85 nucleotides
RR42_RS25605 and RR42_RS25610 are separated by 148 nucleotides
RR42_RS25610 and RR42_RS25615 are separated by 133 nucleotides
RR42_RS25595: RR42_RS25595 - alpha/beta hydrolase, at 1,086,720 to 1,087,583
_RS25595
RR42_RS25600: RR42_RS25600 - AraC family transcriptional regulator, at 1,087,712 to 1,088,500
_RS25600
RR42_RS25605: RR42_RS25605 - N-ethylmaleimide reductase, at 1,088,586 to 1,089,680
_RS25605
RR42_RS25610: RR42_RS25610 - alpha/beta hydrolase, at 1,089,829 to 1,090,668
_RS25610
RR42_RS25615: RR42_RS25615 - TetR family transcriptional regulator, at 1,090,802 to 1,091,383
_RS25615
Group
Condition
RR42
_RS25595
RR42
_RS25600
RR42
_RS25605
RR42
_RS25610
RR42
_RS25615
lb
LB
-1.4
-0.0
-0.5
+0.5
-0.7
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.3
-1.8
-0.2
+0.2
+0.3
nitrogen source
L-Valine (N)
-0.4
-0.5
-0.3
+0.1
+0.3
stress
R2A with Zinc 0.1 mM
+0.4
-1.3
-0.3
+0.1
+0.2
stress
R2A with Nickel (II) chloride 0.35 mM
-0.0
-0.9
+0.4
+0.2
-0.4
carbon source
L-Alanine (C)
+0.3
-0.8
-0.2
+0.2
-0.1
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.3
-0.5
+0.3
+0.3
-0.3
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.2
-0.4
+0.1
-0.5
+0.4
stress
R2A with copper (II) chloride 0.25 mM
+0.4
-1.3
+0.1
+0.1
+0.1
stress
R2A with Cisplatin 0.001 mg/ml
-0.1
-1.1
+0.3
+0.2
+0.1
stress
R2A with D-Cycloserine 0.5 mg/ml
+0.5
-1.2
+0.0
+0.0
+0.2
carbon source
D-Lactate (C)
+0.6
-0.7
-0.1
+0.1
-0.1
stress
R2A with Vancomycin 0.5 mg/ml
+0.3
-0.9
-0.2
+0.2
+0.3
carbon source
4-Hydroxybenzoic Acid (C)
+0.4
-0.6
+0.1
+0.3
-0.3
carbon source
Suberic (C)
-0.4
+0.5
-0.0
+0.3
-0.4
nitrogen source
D-Alanine (N)
+0.2
-0.8
+0.2
+0.3
+0.2
nitrogen source
L-Phenylalanine (N)
-0.1
+0.9
-0.2
-0.3
-0.2
stress
R2A with Cobalt chloride 0.3 mM
+0.5
-0.5
+0.5
+0.1
-0.3
carbon source
adipate (C)
-0.2
+0.5
-0.3
+0.4
+0.5
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.5
+0.6
+0.0
-0.1
-0.3
stress
R2A with Lomefloxacin 0.001 mM
+0.4
+0.2
+0.1
-0.5
+0.6
stress
R2A with Cisplatin 0.001 mg/ml
+0.6
+0.3
+0.0
-0.3
+0.3
carbon source
L-Proline (C)
+0.3
+0.6
-0.2
+0.0
+0.3
oxygen_nitrate
exometabolites; 5% oxygen; 5 mM nitrate
-0.2
+1.2
+0.4
-0.1
-0.1
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.4
+0.4
+0.2
+0.5
-0.1
temperature
R2A 23C
+0.5
+1.1
-0.0
-0.2
-0.0
r2a
R2A
+0.2
+0.4
+0.3
+0.2
+0.4
stress
R2A with Lomefloxacin 0.00075 mM
+0.2
+0.7
+0.2
+0.1
+0.3
stress
R2A with D-Cycloserine 0.01 mg/ml
+0.3
+0.9
+0.2
-0.1
+0.2
carbon source
Protocatechuic Acid (C)
+0.0
+1.6
-0.1
+0.3
+0.2
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