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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Number of genes on each side:
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5
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS25560 and RR42_RS25565 are separated by 3 nucleotides
RR42_RS25565 and RR42_RS25570 are separated by 1 nucleotides
RR42_RS25570 and RR42_RS25575 are separated by 45 nucleotides
RR42_RS25575 and RR42_RS25580 are separated by 79 nucleotides
RR42_RS25560: RR42_RS25560 - MFS transporter, at 1,078,218 to 1,079,561
_RS25560
RR42_RS25565: RR42_RS25565 - alpha/beta hydrolase, at 1,079,565 to 1,080,719
_RS25565
RR42_RS25570: RR42_RS25570 - long-chain fatty acid--CoA ligase, at 1,080,721 to 1,082,400
_RS25570
RR42_RS25575: RR42_RS25575 - aldolase, at 1,082,446 to 1,083,201
_RS25575
RR42_RS25580: RR42_RS25580 - haloacid dehalogenase, at 1,083,281 to 1,083,991
_RS25580
Group
Condition
RR42
_RS25560
RR42
_RS25565
RR42
_RS25570
RR42
_RS25575
RR42
_RS25580
carbon source
Dodecandioic (C)
-0.3
-0.4
-0.9
-0.6
-1.0
carbon source
Dodecandioic (C)
-0.2
-0.2
-1.3
-0.5
-0.6
carbon source
Octanoic (C)
-0.5
-0.2
-0.9
-0.5
-0.4
carbon source
Octanoic (C)
-0.7
-0.2
-0.5
-0.1
-0.6
carbon source
Heptanoic (C)
-0.0
-0.1
-0.6
-0.2
-0.6
carbon source
Heptanoic (C)
-0.4
+0.0
-0.4
-0.2
-0.4
carbon source
adipate (C)
+0.2
-0.6
-0.8
-0.0
-0.1
stress
R2A with Zinc 0.1 mM
-0.3
-0.2
-0.1
-0.1
-0.4
carbon source
Hexanoic (C)
-0.1
+0.0
-0.2
-0.3
-0.4
nitrogen source
L-Serine (N)
+0.0
-0.4
-0.1
-0.1
-0.4
stress
R2A with Nickel (II) chloride 0.35 mM
-0.7
-0.0
+0.2
-0.3
-0.2
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.3
-0.5
-0.2
+0.3
-0.2
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.1
-0.2
-0.2
-0.3
-0.2
carbon source
D,L-Lactate (C)
+0.1
-0.0
-0.4
-0.1
-0.4
stress
R2A with Doxycycline hyclate 0.0001 mg/ml
-0.0
-0.4
+0.1
-0.5
+0.1
carbon source
Suberic (C)
+0.1
-0.3
-0.1
-0.0
-0.4
stress
R2A with Cobalt chloride 0.5 mM
-0.4
-0.2
+0.3
-0.2
-0.0
lb
LB
-0.3
-0.3
+0.0
+0.4
-0.3
carbon source
4-Hydroxybenzoic Acid (C)
-0.0
-0.3
-0.4
+0.1
+0.2
stress
R2A with Cobalt chloride 0.3 mM
-0.2
-0.4
-0.1
+0.2
+0.2
stress
R2A with Chloride 300 mM
+0.4
-0.1
-0.2
+0.0
-0.3
stress
R2A with Polymyxin B sulfate 0.005 mg/ml
+0.0
+0.1
+0.4
-0.2
-0.3
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
+0.1
-0.2
-0.3
-0.0
+0.5
stress
R2A with Vancomycin 0.5 mg/ml
-0.2
-0.1
-0.2
+0.3
+0.3
stress
R2A with Cisplatin 0.001 mg/ml
+0.1
+0.0
-0.4
-0.1
+0.4
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.0
-0.2
-0.5
+0.3
+0.6
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+0.2
-0.3
-0.2
+0.0
+0.3
stress
R2A with Lomefloxacin 0.001 mM
+0.2
-0.5
+0.2
-0.0
+0.4
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+0.2
+0.1
-0.3
+0.1
+0.3
nitrogen source
L-Glutamine (N)
+0.3
-0.3
+0.3
+0.2
+0.4
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