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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS25520 and RR42_RS25525 overlap by 4 nucleotides
RR42_RS25525 and RR42_RS25530 are separated by 158 nucleotides
RR42_RS25530 and RR42_RS25535 are separated by 132 nucleotides
RR42_RS25535 and RR42_RS25540 are separated by 419 nucleotides
RR42_RS25520: RR42_RS25520 - alpha/beta hydrolase, at 1,071,378 to 1,072,310
_RS25520
RR42_RS25525: RR42_RS25525 - enoyl-CoA hydratase, at 1,072,307 to 1,073,281
_RS25525
RR42_RS25530: RR42_RS25530 - TetR family transcriptional regulator, at 1,073,440 to 1,074,090
_RS25530
RR42_RS25535: RR42_RS25535 - TetR family transcriptional regulator, at 1,074,223 to 1,074,834
_RS25535
RR42_RS25540: RR42_RS25540 - hypothetical protein, at 1,075,254 to 1,075,718
_RS25540
Group
Condition
RR42
_RS25520
RR42
_RS25525
RR42
_RS25530
RR42
_RS25535
RR42
_RS25540
carbon source
Octanoic (C)
-0.5
-0.3
-1.2
+0.0
-0.4
carbon source
Protocatechuic Acid (C)
-0.4
-0.1
-1.3
+0.2
-0.5
stress
R2A with Doxycycline hyclate 0.0001 mg/ml
+0.1
+0.0
-1.6
-0.1
-0.4
stress
R2A with Lomefloxacin 0.001 mM
-0.9
-0.8
-0.7
+0.4
+0.2
nitrogen source
L-Lysine (N)
-0.6
+0.2
-1.0
+0.0
-0.2
carbon source
Octanoic (C)
-0.3
-0.5
-0.6
+0.2
-0.2
carbon source
L-Lactate (C)
-0.2
-0.1
-0.6
+0.1
-0.3
carbon source
pyruvate (C)
-0.4
-0.5
-0.2
+0.1
-0.3
carbon source
L-Alanine (C)
-0.3
+0.3
-0.5
-0.2
-0.2
nitrogen source
nitrite (N)
+0.1
+0.1
-1.2
+0.1
+0.0
lb
LB
-0.2
-0.5
-0.6
+0.4
-0.1
nitrogen source
L-Glutamine (N)
-0.7
+0.3
-0.2
+0.2
-0.4
stress
R2A with Cobalt chloride 0.5 mM
-0.5
-0.5
+0.3
-0.2
+0.1
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.4
-0.3
-0.4
-0.3
-0.2
nitrogen source
D-Alanine (N)
-0.2
+0.0
-0.8
-0.1
+0.3
nitrogen source
D-Alanine (N)
-0.3
+0.1
-0.8
+0.0
+0.2
carbon source
Azelaic (C)
-0.6
-0.0
-0.2
+0.3
-0.3
nitrogen source
L-Leucine (N)
-0.2
+0.1
-0.7
+0.3
-0.2
carbon source
L-Alanine (C)
-0.4
+0.1
-0.4
+0.2
-0.1
stress
R2A with Cobalt chloride 0.3 mM
-0.1
-0.1
-0.5
-0.4
+0.5
carbon source
L-Tryptophan (C)
-0.4
+0.3
-0.4
+0.1
-0.1
stress
R2A with Nickel (II) chloride 0.25 mM
-0.5
+0.3
-0.4
-0.2
+0.3
carbon source
Azelaic (C)
-0.3
-0.3
+0.1
+0.4
-0.2
nitrogen source
nitrate (N)
+0.1
+0.1
-0.8
+0.2
+0.1
carbon source
Disodium Glutarate (C)
-0.2
-0.4
+0.4
+0.3
-0.1
carbon source
Protocatechuic Acid (C)
+0.0
-0.4
-0.4
+0.5
+0.4
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.8
+0.3
+0.5
-0.1
+0.2
stress
R2A with Zinc 0.1 mM
+0.1
-0.1
-0.4
+0.3
+0.5
carbon source
adipate (C)
-0.3
-0.2
+0.7
+0.1
+0.1
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.3
+0.3
+0.4
+0.1
-0.1
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