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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS24910 and RR42_RS24915 are separated by 344 nucleotides
RR42_RS24915 and RR42_RS24920 are separated by 99 nucleotides
RR42_RS24920 and RR42_RS24925 are separated by 2 nucleotides
RR42_RS24925 and RR42_RS24930 are separated by 105 nucleotides
RR42_RS24910: RR42_RS24910 - hypothetical protein, at 926,648 to 927,565
_RS24910
RR42_RS24915: RR42_RS24915 - hypothetical protein, at 927,910 to 928,101
_RS24915
RR42_RS24920: RR42_RS24920 - MFS transporter, at 928,201 to 929,736
_RS24920
RR42_RS24925: RR42_RS24925 - LysR family transcriptional regulator, at 929,739 to 930,644
_RS24925
RR42_RS24930: RR42_RS24930 - AraC family transcriptional regulator, at 930,750 to 931,346
_RS24930
Group
Condition
RR42
_RS24910
RR42
_RS24915
RR42
_RS24920
RR42
_RS24925
RR42
_RS24930
carbon source
succinate (C)
-0.1
+0.0
-0.1
-0.1
-3.7
nitrogen source
L-Phenylalanine (N)
+0.0
+0.2
-0.1
-0.1
-3.8
stress
R2A with Zinc 0.1 mM
-0.0
+0.1
-0.0
-0.0
-3.4
stress
R2A with Thallium(I) acetate 0.001 mg/ml
-0.1
+0.4
+0.0
-0.2
-3.5
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.3
-1.0
+0.0
+0.0
-2.2
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.0
-1.0
+0.3
-0.1
-2.0
carbon source
L-Malic (C)
-0.1
+0.0
-0.1
-0.2
-2.4
stress
R2A with Cobalt chloride 0.3 mM
-0.1
-0.0
-0.1
+0.1
-2.4
stress
R2A with nitrate 200 mM
-0.3
-0.1
-0.1
+0.1
-2.1
lb
LB
-0.2
-0.8
+0.0
-0.2
-1.0
stress
R2A with Cephalothin 0.25 mg/ml
+0.1
-0.1
+0.0
-0.2
-1.8
carbon source
Dodecandioic (C)
+0.1
+0.1
+0.3
-0.3
-2.4
nitrogen source
Glycine (N)
-0.2
-0.2
-0.1
-0.4
-1.1
nitrogen source
casaminos (N)
-0.0
+0.1
-0.2
-0.1
-1.6
carbon source
Suberic (C)
+0.1
+0.0
-0.1
-0.3
-1.5
carbon source
succinate (C)
-0.1
+0.3
-0.1
-0.3
-1.2
nitrogen source
L-Leucine (N)
+0.3
+0.3
-0.2
-0.1
-1.9
carbon source
D,L-Lactate (C)
-0.0
+0.2
+0.1
-0.0
-1.6
carbon source
L-Leucine (C)
+0.1
-0.1
-0.1
+0.3
-1.4
temperature
R2A 37C
+0.1
+0.2
-0.4
+0.1
-1.2
stress
R2A with copper (II) chloride 0.25 mM
+0.4
-0.2
-0.4
-0.0
-0.9
carbon source
L-Tryptophan (C)
+0.3
+0.4
-0.2
-0.3
-1.2
oxygen_nitrate
exometabolites; 5% oxygen; 5 mM nitrate
+0.6
+0.4
+0.0
+0.1
-2.2
stress
R2A with D-Cycloserine 0.01 mg/ml
+0.2
+0.8
+0.1
-0.1
-1.6
stress
R2A with Bacitracin 0.5 mg/ml
+0.1
+0.5
+0.2
-0.2
-1.0
stress
R2A with Lomefloxacin 0.001 mM
+0.6
+0.6
+0.3
-0.4
-1.2
nitrogen source
L-Lysine (N)
-0.2
+0.4
+0.2
-0.3
+1.1
stress
R2A with Nickel (II) chloride 0.5 mM
+0.0
+0.3
-0.1
+0.1
+1.3
carbon source
Carbon source D,L-Lactate 10 mM
+0.2
+0.2
-0.3
+0.2
+1.5
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
+0.4
+0.1
+0.1
-0.1
+1.4
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