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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS24865 and RR42_RS24870 are separated by 849 nucleotides
RR42_RS24870 and RR42_RS24875 are separated by 449 nucleotides
RR42_RS24875 and RR42_RS24880 overlap by 8 nucleotides
RR42_RS24880 and RR42_RS24885 are separated by 40 nucleotides
RR42_RS24865: RR42_RS24865 - hypothetical protein, at 916,845 to 917,063
_RS24865
RR42_RS24870: RR42_RS24870 - membrane protein, at 917,913 to 919,076
_RS24870
RR42_RS24875: RR42_RS24875 - IclR family transcriptional regulator, at 919,526 to 920,332
_RS24875
RR42_RS24880: RR42_RS24880 - hypothetical protein, at 920,325 to 920,600
_RS24880
RR42_RS24885: RR42_RS24885 - IclR family transcriptional regulator, at 920,641 to 921,420
_RS24885
Group
Condition
RR42
_RS24865
RR42
_RS24870
RR42
_RS24875
RR42
_RS24880
RR42
_RS24885
nitrogen source
L-Serine (N)
N.D.
+0.0
-0.3
-0.6
-0.4
stress
R2A with Lomefloxacin 0.001 mM
N.D.
+0.3
-0.6
-0.4
-0.4
stress
R2A with Cobalt chloride 0.5 mM
N.D.
-0.2
-0.5
-0.1
-0.3
stress
R2A with Nickel (II) chloride 0.35 mM
N.D.
-0.3
-0.5
-0.3
+0.0
lb
LB
N.D.
+0.0
+0.0
-1.5
+0.5
nitrogen source
L-Isoleucine (N)
N.D.
-0.2
-0.2
-0.4
-0.1
stress
R2A with nitrate 200 mM
N.D.
-0.5
-0.1
-0.3
-0.2
stress
R2A with Zinc 0.1 mM
N.D.
-0.3
-0.4
+0.1
-0.2
stress
R2A with Chloride 300 mM
N.D.
-0.3
-0.2
+0.4
-0.1
carbon source
D,L-Lactate (C)
N.D.
-0.4
+0.1
+0.3
-0.1
stress
R2A with copper (II) chloride 0.25 mM
N.D.
-0.4
-0.1
+0.2
+0.3
carbon source
adipate (C)
N.D.
-0.3
-0.3
+0.9
-0.1
carbon source
Valeric (C)
N.D.
-0.2
-0.1
+0.6
-0.0
carbon source
D-Lactate (C)
N.D.
+0.2
-0.2
+0.5
-0.1
carbon source
4-Hydroxybenzoic Acid (C)
N.D.
+0.1
-0.4
+0.5
+0.2
stress
R2A with Chlorite 4 mM
N.D.
-0.2
-0.1
+0.5
+0.3
carbon source
Heptanoic (C)
N.D.
-0.0
-0.2
+0.8
-0.1
carbon source
D,L-Lactate (C)
N.D.
-0.2
-0.0
+0.8
-0.0
carbon source
Hexanoic (C)
N.D.
-0.1
+0.2
+0.7
-0.1
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
N.D.
+0.2
-0.1
+0.5
+0.2
stress
R2A with D-Cycloserine 0.01 mg/ml
N.D.
+0.0
-0.3
+0.8
+0.2
stress
R2A with Vancomycin 0.5 mg/ml
N.D.
-0.0
-0.2
+0.8
+0.1
carbon source
Disodium Glutarate (C)
N.D.
-0.1
+0.3
+0.7
-0.0
stress
R2A with D-Cycloserine 0.5 mg/ml
N.D.
-0.2
+0.0
+0.8
+0.2
carbon source
Octanoic (C)
N.D.
-0.1
+0.1
+0.7
+0.1
carbon source
propionate (C)
N.D.
+0.1
-0.1
+0.8
+0.1
carbon source
Dodecandioic (C)
N.D.
+0.1
+0.2
+0.7
-0.0
carbon source
Azelaic (C)
N.D.
-0.1
+0.3
+0.6
+0.1
carbon source
Suberic (C)
N.D.
+0.0
+0.1
+0.5
+0.5
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
N.D.
+0.3
+0.6
+0.4
-0.1
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RR42_RS24875
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RR42_RS24885
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