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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS24810 and RR42_RS24815 are separated by 59 nucleotides
RR42_RS24815 and RR42_RS24820 are separated by 6 nucleotides
RR42_RS24820 and RR42_RS24825 are separated by 129 nucleotides
RR42_RS24825 and RR42_RS24830 are separated by 35 nucleotides
RR42_RS24810: RR42_RS24810 - hypothetical protein, at 904,195 to 904,602
_RS24810
RR42_RS24815: RR42_RS24815 - hypothetical protein, at 904,662 to 905,681
_RS24815
RR42_RS24820: RR42_RS24820 - hypothetical protein, at 905,688 to 906,893
_RS24820
RR42_RS24825: RR42_RS24825 - carnitine dehydratase, at 907,023 to 908,177
_RS24825
RR42_RS24830: RR42_RS24830 - 3-oxoacyl-ACP reductase, at 908,213 to 909,013
_RS24830
Group
Condition
RR42
_RS24810
RR42
_RS24815
RR42
_RS24820
RR42
_RS24825
RR42
_RS24830
stress
R2A with Cisplatin 0.001 mg/ml
-0.7
-0.4
-2.3
-0.2
+0.2
carbon source
D,L-Lactate (C)
-0.2
+0.0
-2.0
-0.1
+0.1
carbon source
Protocatechuic Acid (C)
+0.0
-0.9
-1.1
+0.1
-0.3
carbon source
L-Tryptophan (C)
-0.7
-0.3
-1.1
+0.1
+0.0
carbon source
L-Asparagine (C)
-0.6
-0.2
-0.9
-0.1
-0.1
carbon source
Carbon source Phenylacetic 2.5 mM
+0.3
-0.2
-1.1
-0.0
-0.8
carbon source
Carbon source Phenylacetic 2.5 mM
-0.8
-0.4
-0.6
+0.5
-0.5
carbon source
L-Histidine (C)
-0.6
+0.2
-1.4
+0.0
+0.0
nitrogen source
L-Serine (N)
-0.5
-0.3
-0.7
+0.1
-0.2
stress
R2A with copper (II) chloride 0.25 mM
-0.0
+0.3
-1.0
-0.2
-0.7
nitrogen source
L-Leucine (N)
+0.1
-0.4
-0.5
+0.0
-0.9
carbon source
Hexanoic (C)
-0.8
-0.4
-0.3
-0.2
+0.2
stress
R2A with Zinc 0.1 mM
-0.4
+0.1
-1.3
+0.1
-0.0
carbon source
Valeric (C)
-0.2
-0.8
-0.7
-0.2
+0.3
carbon source
succinate (C)
-0.4
+0.2
-0.9
-0.1
-0.2
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
+0.2
-0.1
-1.0
-0.3
-0.3
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.5
+0.2
-0.9
-0.1
+0.3
carbon source
Disodium Glutarate (C)
+0.3
-0.8
-0.4
-0.3
+0.3
carbon source
pyruvate (C)
+0.3
-0.3
-0.9
+0.3
-0.1
lb
LB
-0.7
+0.2
-0.8
+0.5
+0.0
carbon source
Dodecandioic (C)
+0.4
-0.6
-0.4
-0.1
+0.4
stress
R2A with Paraquat dichloride 0.064 mg/ml
-0.9
-0.7
+0.7
+0.3
+0.5
stress
R2A with Lomefloxacin 0.00075 mM
+0.4
-0.6
+0.3
+0.2
-0.4
stress
R2A with Cobalt chloride 0.3 mM
+0.7
-1.0
-0.2
+0.1
+0.4
carbon source
Azelaic (C)
+0.5
-0.9
+0.6
-0.3
+0.2
carbon source
Octanoic (C)
-0.2
-0.6
+0.8
-0.1
+0.2
nitrogen source
L-Phenylalanine (N)
-0.1
-0.6
+1.2
+0.0
-0.3
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
-0.5
-0.2
+1.1
-0.4
+0.4
stress
R2A with D-Cycloserine 0.01 mg/ml
+0.7
-0.4
+0.5
+0.1
-0.4
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.2
+0.2
+0.8
+0.2
+0.9
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