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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS24740 and RR42_RS24745 are separated by 99 nucleotides
RR42_RS24745 and RR42_RS24750 are separated by 251 nucleotides
RR42_RS24750 and RR42_RS24755 are separated by 140 nucleotides
RR42_RS24755 and RR42_RS24760 are separated by 217 nucleotides
RR42_RS24740: RR42_RS24740 - hydrolase, at 887,872 to 888,567
_RS24740
RR42_RS24745: RR42_RS24745 - hypothetical protein, at 888,667 to 889,308
_RS24745
RR42_RS24750: RR42_RS24750 - LysR family transcriptional regulator, at 889,560 to 889,904
_RS24750
RR42_RS24755: RR42_RS24755 - ATP synthase subunit beta, at 890,045 to 893,467
_RS24755
RR42_RS24760: RR42_RS24760 - hypothetical protein, at 893,685 to 893,993
_RS24760
Group
Condition
RR42
_RS24740
RR42
_RS24745
RR42
_RS24750
RR42
_RS24755
RR42
_RS24760
stress
R2A with Cisplatin 0.001 mg/ml
-0.1
-0.5
-3.2
+0.1
-0.3
carbon source
Protocatechuic Acid (C)
+0.1
+0.2
-0.5
-0.1
-3.4
stress
R2A with nitrate 200 mM
-0.1
+0.2
-0.2
+0.1
-2.1
carbon source
Protocatechuic Acid (C)
+0.1
+0.0
+0.4
-0.3
-2.1
stress
R2A with Vancomycin 0.5 mg/ml
-0.1
-0.0
-0.0
-0.1
-1.6
lb
LB
+0.4
+0.1
-1.1
-0.1
-1.1
stress
R2A with Dimethyl Sulfoxide 5 vol%
-0.0
-0.2
+0.1
-0.2
-1.5
carbon source
L-Histidine (C)
-0.0
+0.0
-1.1
-0.1
-0.5
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.1
-0.5
+0.4
-0.2
-1.3
stress
R2A with Chloride 300 mM
+0.1
+0.0
-0.7
-0.1
-0.8
stress
R2A with Chlorite 4 mM
+0.1
-0.2
+0.1
-0.1
-1.1
carbon source
adipate (C)
-0.1
-0.1
+0.2
-0.2
-1.2
stress
R2A with Vancomycin 0.5 mg/ml
-0.0
+0.0
-0.8
+0.2
-0.5
carbon source
L-Phenylalanine (C)
+0.0
+0.3
-0.6
+0.1
-0.9
stress
R2A with sodium fluoride 100 mM
+0.0
+0.1
+0.2
+0.0
-1.3
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.2
-0.4
+0.5
-0.1
-0.5
carbon source
Carbon source Phenylacetic 2.5 mM
-0.1
+0.3
+0.1
+0.1
-0.9
carbon source
Carbon source D,L-Lactate 10 mM
-0.0
+0.3
+0.3
+0.1
-1.2
stress
R2A with Nickel (II) chloride 0.25 mM
-0.1
-0.0
+0.7
+0.0
-0.9
nitrogen source
nitrite (N)
-0.0
+0.2
-0.5
-0.1
+0.7
nitrogen source
D-Alanine (N)
+0.0
+0.1
-0.7
-0.0
+1.1
carbon source
pyruvate (C)
+0.2
+0.4
-0.4
-0.0
+0.5
carbon source
Suberic (C)
-0.2
-0.1
+0.7
-0.2
+0.6
carbon source
D-Fructose (C)
+0.1
+0.2
-0.6
+0.1
+1.0
nitrogen source
Glucuronamide (N)
-0.1
+0.2
-0.1
-0.2
+1.0
nitrogen source
casaminos (N)
-0.2
+0.0
+0.4
-0.1
+0.9
nitrogen source
L-Tryptophan (N)
-0.2
+0.2
-0.2
+0.1
+1.5
nitrogen source
L-Leucine (N)
+0.1
+0.2
-0.0
-0.1
+1.4
nitrogen source
L-Phenylalanine (N)
+0.2
+0.3
+0.1
+0.0
+1.1
stress
R2A with Lomefloxacin 0.001 mM
+0.4
+0.2
+0.7
+0.1
+1.1
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