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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS24655 and RR42_RS24660 are separated by 214 nucleotides
RR42_RS24660 and RR42_RS24665 overlap by 4 nucleotides
RR42_RS24665 and RR42_RS24670 are separated by 69 nucleotides
RR42_RS24670 and RR42_RS24675 are separated by 323 nucleotides
RR42_RS24655: RR42_RS24655 - TetR family transcriptional regulator, at 867,861 to 868,562
_RS24655
RR42_RS24660: RR42_RS24660 - acriflavin resistance protein, at 868,777 to 871,884
_RS24660
RR42_RS24665: RR42_RS24665 - hypothetical protein, at 871,881 to 872,990
_RS24665
RR42_RS24670: RR42_RS24670 - hypothetical protein, at 873,060 to 873,617
_RS24670
RR42_RS24675: RR42_RS24675 - hypothetical protein, at 873,941 to 875,110
_RS24675
Group
Condition
RR42
_RS24655
RR42
_RS24660
RR42
_RS24665
RR42
_RS24670
RR42
_RS24675
carbon source
L-Alanine (C)
-0.3
-0.1
-1.3
-0.4
-0.1
carbon source
propionate (C)
-0.0
-0.1
-1.1
-0.5
-0.2
stress
R2A with Nickel (II) chloride 0.5 mM
-0.0
-0.2
-0.9
-0.6
-0.1
carbon source
pyruvate (C)
-0.1
-0.0
-1.7
-0.0
+0.3
stress
R2A with Cisplatin 0.001 mg/ml
-0.1
-0.1
-1.2
-0.3
+0.1
stress
R2A with Sisomicin 0.035 mg/ml
+0.1
+0.0
-0.5
-0.6
-0.6
stress
R2A with Nickel (II) chloride 0.35 mM
+0.1
-0.1
-0.5
-0.7
-0.3
stress
R2A with D-Cycloserine 0.5 mg/ml
-0.1
+0.1
-0.4
-0.3
-0.7
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.1
+0.0
-0.8
+0.0
-0.5
carbon source
L-Histidine (C)
+0.0
+0.1
-0.7
-0.5
-0.3
stress
R2A with Nickel (II) chloride 0.25 mM
+0.0
-0.0
-0.5
-0.2
-0.5
stress
R2A with Chloride 300 mM
+0.2
+0.0
-1.4
-0.3
+0.3
carbon source
Suberic (C)
-0.2
-0.2
+0.1
-0.4
-0.5
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
-0.1
-0.2
-0.3
-0.7
+0.2
stress
R2A with Thallium(I) acetate 0.001 mg/ml
-0.1
+0.1
-1.1
+0.2
-0.1
carbon source
L-Lactate (C)
-0.2
-0.1
-0.9
+0.1
-0.0
carbon source
Dodecandioic (C)
+0.2
-0.0
-0.8
-0.3
-0.2
nitrogen source
Glycine (N)
-0.1
-0.2
-0.7
-0.1
+0.1
carbon source
L-Threonine (C)
-0.2
+0.1
-0.7
-0.1
-0.1
carbon source
Octanoic (C)
-0.3
-0.2
-0.4
-0.4
+0.3
stress
R2A with Cobalt chloride 0.5 mM
-0.1
+0.0
-0.0
-0.9
+0.2
stress
R2A with Doxycycline hyclate 0.0001 mg/ml
+0.4
+0.1
-0.6
-0.5
-0.2
carbon source
adipate (C)
-0.0
+0.0
+0.3
-0.9
-0.1
temperature
R2A 23C
+0.1
+0.0
-0.7
-0.2
+0.2
carbon source
Protocatechuic Acid (C)
+0.1
+0.2
+0.3
-0.8
-0.3
carbon source
L-Tryptophan (C)
+0.3
+0.0
-0.8
-0.3
+0.3
temperature
R2A 37C
+0.2
+0.1
-0.7
-0.0
+0.3
stress
R2A with Cisplatin 0.001 mg/ml
+0.2
+0.2
-0.1
-0.5
+0.3
nitrogen source
nitrite (N)
+0.2
+0.0
+0.2
-0.4
+0.4
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.2
+0.1
+1.1
-0.2
+0.2
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