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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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5
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS24570 and RR42_RS24575 are separated by 714 nucleotides
RR42_RS24575 and RR42_RS24580 are separated by 59 nucleotides
RR42_RS24580 and RR42_RS24585 are separated by 77 nucleotides
RR42_RS24585 and RR42_RS24590 are separated by 62 nucleotides
RR42_RS24570: RR42_RS24570 - alpha/beta hydrolase, at 845,289 to 846,266
_RS24570
RR42_RS24575: RR42_RS24575 - endoribonuclease L-PSP, at 846,981 to 847,394
_RS24575
RR42_RS24580: RR42_RS24580 - hypothetical protein, at 847,454 to 848,818
_RS24580
RR42_RS24585: RR42_RS24585 - hypothetical protein, at 848,896 to 850,731
_RS24585
RR42_RS24590: RR42_RS24590 - RND transporter, at 850,794 to 853,154
_RS24590
Group
Condition
RR42
_RS24570
RR42
_RS24575
RR42
_RS24580
RR42
_RS24585
RR42
_RS24590
stress
R2A with Vancomycin 0.5 mg/ml
-0.2
-2.6
-0.1
-0.1
-0.0
carbon source
Protocatechuic Acid (C)
-0.4
-1.3
+0.0
-0.0
+0.1
lb
LB
-0.2
-1.2
-0.5
+0.2
+0.2
stress
R2A with Nickel (II) chloride 0.35 mM
-0.2
-0.6
+0.0
-0.3
-0.4
stress
R2A with D-Cycloserine 0.5 mg/ml
-0.1
-0.9
-0.0
-0.4
+0.1
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
-0.1
-1.1
-0.0
-0.0
-0.1
stress
R2A with nitrate 200 mM
-0.3
-0.8
+0.0
-0.0
-0.1
carbon source
Suberic (C)
-0.3
-0.9
-0.1
+0.1
-0.0
carbon source
D,L-Lactate (C)
+0.0
-1.0
+0.0
-0.1
-0.1
stress
R2A with Dimethyl Sulfoxide 5 vol%
-0.2
-0.1
-0.2
-0.4
-0.2
carbon source
Protocatechuic Acid (C)
-0.1
-0.9
-0.2
+0.2
+0.1
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.1
-1.0
+0.2
+0.2
-0.1
nitrogen source
L-Lysine (N)
-0.2
-0.8
-0.2
+0.1
+0.2
carbon source
Pimelic (C)
-0.2
-0.8
-0.1
+0.0
+0.1
carbon source
Carbon source Phenylacetic 2.5 mM
+0.1
-1.1
+0.0
+0.2
+0.0
carbon source
Valeric (C)
-0.3
-0.7
+0.1
+0.0
+0.1
stress
R2A with Vancomycin 0.5 mg/ml
-0.3
+0.2
-0.1
-0.4
-0.0
carbon source
succinate (C)
+0.0
-0.8
+0.1
+0.1
+0.2
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.6
+0.5
-0.0
-0.3
+0.0
stress
R2A with Cobalt chloride 0.5 mM
-0.5
+0.4
-0.0
-0.1
-0.1
carbon source
Octanoic (C)
-0.1
-0.5
+0.0
+0.2
+0.2
carbon source
Carbon source Phenylacetic 2.5 mM
+0.2
-0.5
+0.1
+0.1
-0.1
nitrogen source
L-Valine (N)
+0.2
-0.3
+0.1
+0.2
-0.3
carbon source
succinate (C)
-0.0
-0.6
+0.0
+0.3
+0.2
nitrogen source
L-Glutamine (N)
+0.4
+0.4
+0.1
-0.4
-0.5
carbon source
propionate (C)
-0.0
+0.6
+0.0
-0.4
-0.2
carbon source
L-Threonine (C)
-0.2
+0.6
+0.0
-0.2
-0.1
stress
R2A with Chloride 300 mM
+0.1
+0.6
-0.0
-0.1
-0.3
stress
R2A with Thallium(I) acetate 0.001 mg/ml
-0.1
+1.0
-0.1
-0.3
-0.2
stress
R2A with nitrate 150 mM
+0.3
+0.6
+0.2
+0.0
-0.1
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RR42_RS24580
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