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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS24270 and RR42_RS24275 are separated by 108 nucleotides
RR42_RS24275 and RR42_RS24280 overlap by 4 nucleotides
RR42_RS24280 and RR42_RS24285 are separated by 1 nucleotides
RR42_RS24285 and RR42_RS24300 are separated by 2713 nucleotides
RR42_RS24270: RR42_RS24270 - hypothetical protein, at 772,514 to 773,482
_RS24270
RR42_RS24275: RR42_RS24275 - hypothetical protein, at 773,591 to 774,478
_RS24275
RR42_RS24280: RR42_RS24280 - gentisate 1,2-dioxygenase, at 774,475 to 775,524
_RS24280
RR42_RS24285: RR42_RS24285 - 2-polyprenyl-6-methoxyphenol hydroxylase, at 775,526 to 777,196
_RS24285
RR42_RS24300: RR42_RS24300 - acetyl-CoA acetyltransferase, at 779,910 to 781,097
_RS24300
Group
Condition
RR42
_RS24270
RR42
_RS24275
RR42
_RS24280
RR42
_RS24285
RR42
_RS24300
carbon source
adipate (C)
-0.3
-0.9
-0.1
-0.1
-0.1
carbon source
Azelaic (C)
-0.3
-0.8
+0.3
-0.1
-0.1
nitrogen source
L-Lysine (N)
-0.3
-0.4
-0.1
-0.2
+0.1
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
-0.3
-0.4
-0.3
-0.1
+0.1
carbon source
succinate (C)
-0.0
-0.6
-0.3
+0.2
-0.0
carbon source
Disodium Glutarate (C)
-0.2
-0.5
-0.2
+0.1
-0.0
carbon source
adipate (C)
-0.4
-0.2
-0.2
+0.2
-0.1
carbon source
L-Tryptophan (C)
-0.3
-0.4
+0.2
-0.1
+0.1
carbon source
Protocatechuic Acid (C)
-0.2
+0.1
-0.5
+0.2
+0.0
stress
R2A with Lomefloxacin 0.001 mM
+0.4
-0.6
-0.3
-0.1
+0.3
nitrogen source
L-Tryptophan (N)
+0.2
-0.0
-0.6
+0.0
+0.2
lb
LB
+0.2
+0.6
-0.7
-0.1
-0.1
stress
R2A with Vancomycin 0.5 mg/ml
+0.2
-0.7
+0.3
+0.1
+0.0
carbon source
Octanoic (C)
+0.3
-0.2
+0.2
+0.1
-0.3
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+0.4
+0.5
-0.5
+0.1
-0.1
stress
R2A with D-Cycloserine 0.5 mg/ml
+0.3
+0.6
-0.4
-0.2
+0.1
stress
R2A with Chlorite 4 mM
+0.4
-0.2
+0.3
-0.0
+0.1
carbon source
Ethanol (C)
+0.2
+0.7
+0.0
-0.0
-0.2
carbon source
L-Malic (C)
+0.7
-0.1
+0.2
-0.1
+0.1
carbon source
Carbon source D,L-Lactate 10 mM
+0.4
+0.3
+0.1
-0.1
+0.2
stress
R2A with Vancomycin 0.5 mg/ml
+0.2
+0.6
-0.1
-0.1
+0.2
carbon source
L-Asparagine (C)
+0.4
+0.1
+0.3
-0.1
+0.1
carbon source
L-Threonine (C)
+0.7
+0.1
+0.3
-0.1
+0.2
stress
R2A with nitrate 200 mM
+0.4
+0.3
+0.1
+0.1
+0.3
carbon source
D-Lactate (C)
+0.5
+0.3
+0.3
-0.0
+0.1
stress
R2A with copper (II) chloride 0.25 mM
+0.2
+0.5
+0.3
+0.1
+0.1
stress
R2A with Dimethyl Sulfoxide 5 vol%
+0.6
-0.1
+0.5
+0.1
+0.3
carbon source
L-Histidine (C)
+0.7
+0.4
+0.2
+0.1
+0.1
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.4
+0.5
+0.2
+0.1
+0.2
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.4
+0.4
+0.6
+0.0
-0.1
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